Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J21
         (884 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.34 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   7.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.7  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 341 LKAEPRASSRSTESVTPNSSSYANYWKMSIWS 436
           +K +   S+ ST S T  S++Y N    SIWS
Sbjct: 189 IKPQLHVSTGSTSSPTIASATYTNSANSSIWS 220


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 9   ITTHYREFLRFXLVERCPTGNVAP 80
           +  HY EF+R+ L E  P G V P
Sbjct: 400 LENHYEEFVRYELGELAP-GLVGP 422


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 392 NSSSYANYWKMSIWSQKRP 448
           NSSS  N  +  +WS+K P
Sbjct: 43  NSSSCGNGNRCDLWSEKFP 61


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 372 DLELALGSAFSFLKP 328
           D EL   SAFS++KP
Sbjct: 145 DDELRSSSAFSYIKP 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,916
Number of Sequences: 336
Number of extensions: 1770
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)