Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J20
         (1284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -1

Query: 1200 GGGXGVGXXGGGXGG--GGXXGXXGG 1129
            G G G G  GGG GG  GG  G  GG
Sbjct: 239  GFGGGPGGFGGGLGGFGGGPGGFGGG 264



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -1

Query: 1200 GGGXGVGXXGGGXGG--GGXXGXXG 1132
            G G G+G  GGG GG  GG  G  G
Sbjct: 246  GFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 1030 PPPXERXGXRGXXXPPPPP 974
            PPP    G  G   PPPPP
Sbjct: 762  PPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = -2

Query: 911 PPPRPXXXGGGGGXXXPPXXXXXXXXXXKXPPPXPXPXGGGG 786
           PPP P      GG   PP            PPP P     GG
Sbjct: 752 PPPAPIM----GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.154    0.542 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,879
Number of Sequences: 5004
Number of extensions: 24361
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)