Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_J19
(849 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical... 32 0.59
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 0.78
Z80215-14|CAI79138.1| 662|Caenorhabditis elegans Hypothetical p... 29 3.2
Z80215-13|CAI79137.1| 640|Caenorhabditis elegans Hypothetical p... 29 3.2
Z80215-12|CAB02277.1| 652|Caenorhabditis elegans Hypothetical p... 29 3.2
Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical p... 29 4.2
Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical p... 29 4.2
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 29 4.2
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 29 5.5
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 5.5
AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical ... 29 5.5
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 28 7.3
AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical ... 28 7.3
>AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical
protein Y53F4B.25 protein.
Length = 603
Score = 31.9 bits (69), Expect = 0.59
Identities = 31/113 (27%), Positives = 35/113 (30%), Gaps = 10/113 (8%)
Frame = +2
Query: 530 LXPPERASQKSTLKSXVXKPDRTI-----KIPGRFPLQAPSCALLXPDPCRLPGIP--CX 688
L P+RA L +P T+ P R L P LL P P R P P
Sbjct: 176 LDRPQRAPTDLKLVKLPPQPMSTVAPFKHNSPVRRQLVDPLPPLLQPSPVRFPAQPWQIP 235
Query: 689 XLSSPSXKXGPFLHTLHPX*VSPVPXVGPFXXQX---WAXVAXXPPXPTPXPP 838
L P P +P PF Q W P P P PP
Sbjct: 236 PLHPHQSTPNPLTQFFQPIPQHLIPPPNPFFPQQHQTWTPPTLLQPNPIPPPP 288
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.78
Identities = 22/86 (25%), Positives = 30/86 (34%)
Frame = +2
Query: 587 PDRTIKIPGRFPLQAPSCALLXPDPCRLPGIPCXXLSSPSXKXGPFLHTLHPX*VSPVPX 766
P + + P P P A+ P P L P + P+ P+ P +P P
Sbjct: 58 PQQAVPAPAPPPAPYPQHAVPAPAP-PLASYPQNAVPVPAPPPAPYPQHAVP---APAPP 113
Query: 767 VGPFXXQXWAXVAXXPPXPTPXPPPP 844
P+ A P P PPPP
Sbjct: 114 PAPYPQHAVPAPAPYQQQPPPPPPPP 139
>Z80215-14|CAI79138.1| 662|Caenorhabditis elegans Hypothetical
protein C36B1.12c protein.
Length = 662
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 520 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 416
+RQ + + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425
>Z80215-13|CAI79137.1| 640|Caenorhabditis elegans Hypothetical
protein C36B1.12b protein.
Length = 640
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 520 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 416
+RQ + + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425
>Z80215-12|CAB02277.1| 652|Caenorhabditis elegans Hypothetical
protein C36B1.12a protein.
Length = 652
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 520 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 416
+RQ + + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425
>Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical
protein F32D8.7b protein.
Length = 380
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 752 SPVPXVGPFXXQXWAXVAXXPPXPTPXPPPP 844
+P P + PF + P P P PPPP
Sbjct: 224 TPAPTLAPFRPRPTTRRLPPPTTPPPPPPPP 254
>Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical
protein F32D8.7a protein.
Length = 378
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 752 SPVPXVGPFXXQXWAXVAXXPPXPTPXPPPP 844
+P P + PF + P P P PPPP
Sbjct: 222 TPAPTLAPFRPRPTTRRLPPPTTPPPPPPPP 252
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 785 QXWAXVAXXPPXPTPXPPPP 844
Q A +A PP P P PPPP
Sbjct: 808 QKAAPIASNPPPPPPLPPPP 827
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 785 QXWAXVAXXPPXPTPXPPPP 844
Q A +A PP P P PPPP
Sbjct: 808 QKAAPIASNPPPPPPLPPPP 827
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 749 VSPVPXVGPFXXQXWAXVAXXPPXPTPXPPPP 844
V P P V + Q + PP P+P PPPP
Sbjct: 115 VQPPPPV-QYQNQGPQYIEAPPPPPSPPPPPP 145
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 5.5
Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Frame = +2
Query: 527 RLXPPERASQKSTLKSXVXK-PDRTIKIPGRFPLQAPSCALLXPDPCRLPGIPCXXLSSP 703
R+ PP S T+K + P + P P AP P P R+P +P
Sbjct: 438 RVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTPKPAP------PPPSRIP--------NP 483
Query: 704 SXKXGPFLHTLHPX*VSPVPXVGPFXXQXWAXVAXXPPXPTPXPPPP 844
S P + P P+P + + PP P P PPPP
Sbjct: 484 SPSPQPAEVSKSPPPPPPLPPIA-------TPSSVPPPPPPPPPPPP 523
>AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical
protein Y105C5B.11 protein.
Length = 583
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 803 AXXPPXPTPXPPPP 844
A PP PTP PPPP
Sbjct: 397 AAEPPEPTPPPPPP 410
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Frame = +1
Query: 724 PPYPXPLXGISXXXCRSXPXPXL--GXCCXXPPPSNPXP 834
PP P G S P P CC PPP P P
Sbjct: 93 PPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPPTPSP 131
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = +1
Query: 721 LPPYPXPLXGISXXXCRSXPXPXLGXCCXXPP----PSNPXPXPP 843
+PP P P C P P CC PP P P P PP
Sbjct: 84 VPPAPLPPPPPPASPC-CGPSPVPAPCCPPPPAPAAPCCPPPPPP 127
>AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical
protein Y24D9A.5 protein.
Length = 282
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 411 GGNTVIHRIRGITQERTCEQKASKRPGTVK 500
GG +V +R + Q+++ ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,062,621
Number of Sequences: 27780
Number of extensions: 333654
Number of successful extensions: 1372
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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