Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_J18
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 33 0.043
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 30 0.52
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.69
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 2.1
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 28 2.1
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.7
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 4.9
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 4.9
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 26 6.5
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 26 6.5
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 8.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.5
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 8.5
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 33.5 bits (73), Expect = 0.043
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = +2
Query: 374 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 553
+K W + S A+Q S T A R P Q D+W ++ P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183
Query: 554 AKY-SASDAYASTTLISAVV-RNTTTFKSSITERAEKCLTA 670
++Y + + YA T S + N T FK++ + + L A
Sbjct: 184 SQYANMPENYALNTKKSKISNENDTIFKANFQQNKYESLHA 224
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 29.9 bits (64), Expect = 0.52
Identities = 15/66 (22%), Positives = 33/66 (50%)
Frame = -1
Query: 642 VILDLNVVVLRTTALIRVVEA*ASLAEYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 463
++ LN+ V + +++++E A ++ I PG +E+ ASG + T+ +
Sbjct: 80 IMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICDTLASSWPTC 139
Query: 462 VSVFVD 445
++ VD
Sbjct: 140 IAYVVD 145
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.69
Identities = 21/100 (21%), Positives = 41/100 (41%)
Frame = +2
Query: 416 STAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYSASDAYASTTL 595
+++A S ST + S +PT + T T+P ++ S ++ +
Sbjct: 735 NSSAYPSSGSSTFSRLSSTLTSSIIPTETFGSTSGSATGTRPTGSSSQGSVVPTTSTGSS 794
Query: 596 ISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVACGTG 715
+++ TTT + +TE + T + + A GTG
Sbjct: 795 VTSTGTGTTTGVTEVTETSTFETTEIITSTIEPTTASGTG 834
Score = 25.8 bits (54), Expect = 8.5
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +2
Query: 446 STNTETPCVTASRTVPTRQTP--DAWCAQTSTKPGNRIAKYSA-SDAYASTTLISAVVRN 616
+TN+ V+ S T PT TP ++ A TST + S + AST L ++ V
Sbjct: 589 NTNSGNGDVSGSVTTPT-STPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAP 647
Query: 617 TTTFKSS 637
T+TF SS
Sbjct: 648 TSTFTSS 654
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 224 TFSSRGADPAVPTPHTTSVGGANDRDXRGPTQEDPSSCLSMMRFYVKQAAVASKAGRSTS 45
T SSR + + T TTS + T PSS LSM ++ ++V S + S+S
Sbjct: 578 TCSSR-PEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHSSS 636
Query: 44 N 42
+
Sbjct: 637 S 637
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.9 bits (59), Expect = 2.1
Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Frame = +2
Query: 335 ELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVT--ASRTVPTRQTP 508
E+TT + M+ + T + + + +T ++ + + ET + A+ T P +T
Sbjct: 42 EITTMTIP--MEEITTMTTPMEEITTITTPMEETTTITPMVETTTILPMAAMTTPMVETT 99
Query: 509 DAWCAQTSTKPGNRIAKYSASDAYASTTLISAVVRNTTTFKSSITERAEKCLTALKARCL 688
+T+T P + + + +TT+ V T + ++T E+ T L +
Sbjct: 100 TIPTVETTTTP--MVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMAAM 157
Query: 689 TSPV 700
T+P+
Sbjct: 158 TTPM 161
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 2.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 421 CSAGRVCEINEHGDAMCNCIKDC 489
C+A R+C++ E C+ DC
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 3.7
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +2
Query: 332 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPD 511
P T +RS T ++ ++T+ Q S + N+ TP +T+S +V TP
Sbjct: 339 PAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTP-ITSS-SVLNSSTP- 395
Query: 512 AWCAQTSTKPGNRIAKYSASDAYASTTLI--SAVVRNTTTFKSSITERAEKCLTALKARC 685
TS+ N ++S S+T I S+++ ++T SS + +T+ A
Sbjct: 396 ----ITSSSILNTSTPITSSSVLNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALN 451
Query: 686 LTSPV 700
++P+
Sbjct: 452 TSTPI 456
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 4.9
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Frame = +2
Query: 353 TRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTP-DAWCAQT 529
++SL ST T + A ++ S + + T S T TP +
Sbjct: 77 SKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSN 136
Query: 530 STKPGNRIAKYSASDAYASTTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVACG 709
ST P + S S + +TT+IS + TTTF + E + A +T+ + G
Sbjct: 137 STIPSSS----SISASTITTTIISGSTQFTTTFVDQSIDTVEVVIPT--AGYITTTLTSG 190
Query: 710 TGFLTSCAT 736
+ + S T
Sbjct: 191 SSYPVSTTT 199
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 593 LISAVVRNTTTFKSSITERAEKCLTALKARCLTSPV 700
LI + +N T F + E+ CL LK + + SP+
Sbjct: 82 LIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPI 117
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +2
Query: 470 VTASRTVPTRQTPDAWCAQTSTKPGNRIAKYSASDAYASTTLISAVVR 613
V + +P + ++W S +P R Y STT ++ VR
Sbjct: 206 VVTQKQIPNKMDMESWVKYMSLEPSKRGRIYDVLSLEVSTTKLAYYVR 253
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -1
Query: 723 VKKPVPHATGE-VRHLAFSAVRHFSARSVILDLNVVVLRTTALIRVVEA*ASLAEYFAIR 547
V KP+ G + L+F +R +VI D++ VLR + + RV + + A+Y
Sbjct: 162 VAKPIGRLGGPGLIPLSFIQLRDLKTGAVIKDVSEAVLRISCIPRVEDWKRAAADYKKSS 221
Query: 546 LP 541
+P
Sbjct: 222 IP 223
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 305 SSKLSDIPCSMCSASRDVPAAELLRRWTFSSR 210
+S LS PCS+C +R P LR++ F SR
Sbjct: 434 TSLLSSQPCSLCGFNRTQP----LRQFEFRSR 461
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 8.5
Identities = 39/162 (24%), Positives = 56/162 (34%), Gaps = 1/162 (0%)
Frame = +2
Query: 266 LNTSSTECLRAWTRSDTMRQK*PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAK 445
L ++ST C + + T P T S + T T T S
Sbjct: 386 LLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTST----SVPYTSTPVT 441
Query: 446 STNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYSASDAYASTTLISAVVRNTT- 622
ST T T S +VP TP TST S S Y ST + S + T
Sbjct: 442 STPLATTNCTTSTSVPYTSTP-----VTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNC 496
Query: 623 TFKSSITERAEKCLTALKARCLTSPVACGTGFLTSCATWLNV 748
T +S+ + ++ ++PV T+C T +V
Sbjct: 497 TTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSV 538
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 482 RTVPTRQTPDAWCAQTSTKPGNRIAKYSA----SDAYASTTLISAVVRNTTTFKSSITER 649
RTVP P ++C + + G +IA YS S+ +A+ S ++ + T + S+ E
Sbjct: 661 RTVPAIHCPYSYCMEITNSSGWKIA-YSGDTRPSEDFANIAKDSTLLIHEATLEDSMHEI 719
Query: 650 AEK 658
A K
Sbjct: 720 AIK 722
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,209
Number of Sequences: 5004
Number of extensions: 61226
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -