Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J18
         (912 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa...    30   2.4  
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa...    30   2.4  
At5g44660.1 68418.m05472 expressed protein similar to unknown pr...    29   3.2  
At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp...    28   9.9  
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr...    28   9.9  
At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta...    28   9.9  

>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/83 (20%), Positives = 35/83 (42%)
 Frame = -1

Query: 642 VILDLNVVVLRTTALIRVVEA*ASLAEYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 463
           ++  LN+   +   ++ V+E  A   +Y  +  PG +E+    ASG  +           
Sbjct: 113 ILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 172

Query: 462 VSVFVDFADTSCAAVDFQARVFH 394
           V+  VD    S + + F + + +
Sbjct: 173 VTYVVD-TPRSSSPITFMSNMLY 194


>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/83 (20%), Positives = 35/83 (42%)
 Frame = -1

Query: 642 VILDLNVVVLRTTALIRVVEA*ASLAEYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 463
           ++  LN+   +   ++ V+E  A   +Y  +  PG +E+    ASG  +           
Sbjct: 113 ILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 172

Query: 462 VSVFVDFADTSCAAVDFQARVFH 394
           V+  VD    S + + F + + +
Sbjct: 173 VTYVVD-TPRSSSPITFMSNMLY 194


>At5g44660.1 68418.m05472 expressed protein similar to unknown
           protein (pir||T05327)
          Length = 423

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
 Frame = +2

Query: 350 STRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWC--- 520
           S+ +  KR K+  ST KTL+ KS+  ++     T++    ++ + T+  R   +A C   
Sbjct: 191 SSSASYKRSKSCGSTSKTLSHKSSGIRNSFFIKTDSNKS-ISNNSTLEDRFKCNALCLFL 249

Query: 521 -AQTSTKPGNRIAKYSASDAYASTTLISAVVRNTTTFKSSITER-AEKCLTALKARCLTS 694
              +  KP  R ++   S ++  TT ++    +T T   +++ R +    T + AR    
Sbjct: 250 PGFSKGKP-IRSSQKDDSSSFTRTTTMTRSSSSTITVSRTVSVRESTTTTTVISARASME 308

Query: 695 PVACGTGFLTSC 730
              CG+    SC
Sbjct: 309 KFDCGSYTSESC 320


>At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / D111/G-patch
           domain-containing protein contains Pfam profiles
           PF01585: G-patch domain, PF01805: Surp module
          Length = 443

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 173 SVGGANDRDX-RGPTQEDPSSCLSMMRFYVKQAAVASKAGRSTSNLKE 33
           S+   +D D   GP   DP   LSMM FY+K+AA   K  R   +  E
Sbjct: 255 SITRPSDSDSFSGPRGADP---LSMMEFYMKKAAQEEKMRRPRQSKDE 299


>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
           protein (PEX10) identical to zinc-binding peroxisomal
           integral membrane protein GI:4337011 from [Arabidopsis
           thaliana]
          Length = 381

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 614 NTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTSC-ATWLN 745
           N +T  S+ TE   KC   L  R   +   CG  F  SC   W N
Sbjct: 312 NWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCN 356


>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 598

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = +1

Query: 52  DLPAFDATAACFT*KRIIERQDEGSSCVGPR*SRSFAPPTLVVCGVGTAGSAPRLLNVQR 231
           +L   D    CF   R  E +++    +GP      APP  VV  V ++  A R   V R
Sbjct: 258 ELSLIDIHYKCF---REAELEEDSEYFIGP------APPA-VVAEVASSNEAERFEEVTR 307

Query: 232 RSSSAAGTSREAEHIEHGMSESLDEKRY 315
              + A +  +   + H M+    +KRY
Sbjct: 308 IMEADANSPYDVLGVNHNMAADNMKKRY 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,079,437
Number of Sequences: 28952
Number of extensions: 357580
Number of successful extensions: 1050
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)