Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J17
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    56   5e-09
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    46   9e-06
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    46   9e-06
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    40   6e-04
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   4.7  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    26   6.2  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   6.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   6.2  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   6.2  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    26   6.2  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   8.2  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   8.2  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 2/152 (1%)
 Frame = +1

Query: 85  STMALAVTRVILRCEDA--QETQVLDLSECQLMQVPDAVYHLMRHTELKSCDLSGNVITK 258
           ST    + R+I   EDA  +    LDLS   L ++P      ++   +    L  N I  
Sbjct: 8   STKNSEIERIIKEAEDAGPENALTLDLSHLNLRELPYEQLERIQG-RIARLALGHNFIKS 66

Query: 259 IPPKFAVKFSLITDLNLSNNQMARLPDELCTLACLQRLDISHNTFVALPHITFQCPSLHT 438
           I P+  +KF+ +  LN+ +N +   P+ LC L  L+ LDIS N    LP       +L  
Sbjct: 67  IGPEI-LKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKV 125

Query: 439 LLAHHNQIIEVDVDRLARSQALEYVDLSDNPI 534
           L    N++ E+    +A    LE + + +N I
Sbjct: 126 LSISKNRLFELPT-YIAHMPNLEILKIENNHI 156



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 23/88 (26%), Positives = 43/88 (48%)
 Frame = +1

Query: 202 LMRHTELKSCDLSGNVITKIPPKFAVKFSLITDLNLSNNQMARLPDELCTLACLQRLDIS 381
           +++ T L+  ++  NV+ + P     +   +  L++S N++ +LP+    L  L+ L IS
Sbjct: 71  ILKFTRLRYLNIRSNVLREFPESLC-RLESLEILDISRNKIKQLPESFGALMNLKVLSIS 129

Query: 382 HNTFVALPHITFQCPSLHTLLAHHNQII 465
            N    LP      P+L  L   +N I+
Sbjct: 130 KNRLFELPTYIAHMPNLEILKIENNHIV 157


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
 Frame = +1

Query: 217 ELKSCDLSGNVITKIPPKF--AVKFSLITDLNLSNNQMARLPDELCTLACLQRLDISHNT 390
           +L+  ++S N I ++ P     +  + + +LN++NN++  LP     L  L  LD+S+N 
Sbjct: 477 QLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNN 536

Query: 391 FVALPHITFQCPSLHTLLAHHNQIIEVDVDRLARSQALEYVDLSDNPIPARTHDDL 558
           FV  P I  +   L TL   HN + ++   ++     L+++ L  N +  R   ++
Sbjct: 537 FVTFPLIITELSQLETLNFSHNLLSQIS-SKIGSLVKLKHLYLQFNDLSNRLPQEI 591



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
 Frame = +1

Query: 151 LDLSECQLMQVPDAVYHLMRHTELKSCDLSGNVITKIPPKFAVKFSLITDLNLSNNQMA- 327
           LDLS    +  P  +  L   ++L++ + S N++++I  K      L   L L  N ++ 
Sbjct: 530 LDLSYNNFVTFPLIITEL---SQLETLNFSHNLLSQISSKIGSLVKL-KHLYLQFNDLSN 585

Query: 328 RLPDELCTLACLQRLDISHNTFVALPHITFQCPSLHTL 441
           RLP E+  L  L+ +D+S+N    +  ++ +CP L+++
Sbjct: 586 RLPQEIGLLKNLETIDLSYNAITNIASLS-ECPKLNSI 622



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 370 LDISHNTFVALPHITFQCPSLHTLLA---HHNQIIEVDVDRLARSQALEYVDLSDN 528
           LDIS +    +P   +  P  H L++    HN  +++ +D + R   L+ +D+S+N
Sbjct: 410 LDISRSNLEVIPVKIY--PYAHELISLNVSHNLSLDLPLDFMERCVKLKRLDISNN 463


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
 Frame = +1

Query: 85  STMALAVTRVILRCEDAQETQVLDLSECQLMQVPDAVYHLMRHTELKSCDLSGNVITKIP 264
           S+ +L     IL      +   L  S C+L  +P  V+  ++   L S DLSGN +T+IP
Sbjct: 315 SSSSLMEKDAILSSSSWSQLLYLRCSSCKLKSIPKNVFLSLQ--SLVSLDLSGNELTEIP 372

Query: 265 PKFAVKFSLITDLNLSNNQMARLPDEL-CTLACLQRLDISHNTFVALPHITFQCPSLHTL 441
                +   +  LNL++N++         +L+ LQ L +S N   +L  +    PSL  L
Sbjct: 373 YALG-ELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHLTSLSGLE-NVPSLEKL 430

Query: 442 LAHHNQIIE-VDVDRLARSQALEYVDLSDNP 531
               N I + V+  RL  +   E   LS NP
Sbjct: 431 DIRDNSITDVVEFRRLVGNTNFEEAYLSLNP 461


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 25/85 (29%), Positives = 41/85 (48%)
 Frame = +1

Query: 280 KFSLITDLNLSNNQMARLPDELCTLACLQRLDISHNTFVALPHITFQCPSLHTLLAHHNQ 459
           KFS +T+L +++N + RLP E+  L  L  LD S N+   +P        L  +L   N 
Sbjct: 179 KFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNM 238

Query: 460 IIEVDVDRLARSQALEYVDLSDNPI 534
           I  +  + L     L+ + +  NP+
Sbjct: 239 ISVIPAE-LGTLFQLKILGIEGNPL 262



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +1

Query: 232 DLSGNVITKIPPKFAVKFSLITDLNLSNNQMARLPDELCTLACLQRLDISHN 387
           D SGN I  IPP+  +  + + ++ L +N ++ +P EL TL  L+ L I  N
Sbjct: 210 DASGNSIKTIPPELGL-LTELREVLLFDNMISVIPAELGTLFQLKILGIEGN 260


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 583 LLMAGTVVSGHHVSVQVWDCH*DLHIRGLE 494
           LLM+ +  +GH VSVQ +D   D  IR  E
Sbjct: 380 LLMSSSSFNGHSVSVQEYDLTKDSTIRKFE 409


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 280 KFSLITDLNLSNNQMARLPDELCTLACLQRLDISHN 387
           K   ++ L++ +N++ +  +  C   CL+ L +SHN
Sbjct: 190 KLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHN 225


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 247  HSH*DHNFSILCVSLGDILHLELAS 173
            H+H D+NFS++  S  ++   EL S
Sbjct: 1599 HAHCDYNFSVIASSTNEVTISELTS 1623


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 466  EVDVDRLARSQALEYVDLSDNPIPARTHDDLK 561
            EV VD L        +DLS   +P+RT+ ++K
Sbjct: 2403 EVKVDSLTSLVTFNEIDLSKPKLPSRTNSNVK 2434


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 511 VDLSDNPIPARTHDDLKQLSRPSVTLSDRQKEDWEEDLIL*AKLGL 648
           V++  NPI      D K + R S+  S  +   W  DL+L ++LGL
Sbjct: 192 VNILCNPIDTA---DQKDIIRESLIPSIMESRQWIRDLLLPSRLGL 234


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 562 QLSRPSVTLSDRQKEDWEEDLIL*AKLGLHFWL 660
           ++++  + LS    +D EED +L  K+ L  W+
Sbjct: 203 EIAKSGIPLSSEHSDDVEEDRVLSEKMELFQWI 235


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 504 EGLRSC*SVHINFNNLIVMCEQCVQTW 424
           E LR   S HI FN ++   ++CV+ W
Sbjct: 321 ESLRRL-SSHIAFNGIVSYLDKCVRAW 346


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 714 YLGPLKLLHNILTRRIIYQPKMQAQFC-LEYEIFFPVFFLS 595
           +LGPLK+LH  L        +  A F  ++     PVFF++
Sbjct: 98  FLGPLKVLHQFLALNWALFVRKPASFLFIQNPPCIPVFFIA 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,236
Number of Sequences: 5004
Number of extensions: 65603
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)