Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J17
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    41   1e-05
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 27/79 (34%), Positives = 42/79 (53%)
 Frame = +1

Query: 151 LDLSECQLMQVPDAVYHLMRHTELKSCDLSGNVITKIPPKFAVKFSLITDLNLSNNQMAR 330
           L+LS+ +L  V   +++ +    L    LSGN I  I P      S + +L+LS N++  
Sbjct: 388 LELSDNKLRTVGAQLFNGL--FVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTS 445

Query: 331 LPDELCTLACLQRLDISHN 387
           +PD L  LA L+ LD+  N
Sbjct: 446 VPDALRDLALLKTLDLGEN 464



 Score = 32.7 bits (71), Expect = 0.005
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
 Frame = +1

Query: 70  LSYCGSTMALAVTRVILRCEDAQETQVLDLSECQLMQVPDAVYHLMRHTELKSCDLSGNV 249
           L+  G+ +A         C D +E   LDLS  +L  VPDA+  L     LK+ DL  N 
Sbjct: 412 LTLSGNAIASIDPLAFRNCSDLKE---LDLSGNELTSVPDALRDL---ALLKTLDLGENR 465

Query: 250 ITKIPPKFAVKFSLITDLNLSNNQMARLP-DELCTLACLQRLDISHNTFVALPHITFQ 420
           I+            +T L L  N +  L    L  L  LQ L+++ N    +    F+
Sbjct: 466 ISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFE 523



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 27  GNP*DLNCWSLWLP 68
           GNP + NC   WLP
Sbjct: 679 GNPFNCNCSMDWLP 692


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 61  GYPLSYCGSTMALAV 105
           GYPL+Y  + +AL V
Sbjct: 142 GYPLAYVAAKLALGV 156


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 392 NVLCEMSNRCRQASVHSSSG 333
           N L    ++C Q SVH S+G
Sbjct: 356 NTLERTPSKCSQTSVHYSNG 375


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 235 DHNFSILCVSLG 200
           DHN S LC  LG
Sbjct: 128 DHNISALCKELG 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,382
Number of Sequences: 438
Number of extensions: 4489
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)