Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J16
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   141   1e-34
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   141   1e-34
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    28   2.0  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  141 bits (342), Expect = 1e-34
 Identities = 70/138 (50%), Positives = 85/138 (61%)
 Frame = +2

Query: 101 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 280
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 281 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 460
                              TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 461 VAQDSSYKYFEVILVDPS 514
           V QD++YK+FEVILVDPS
Sbjct: 121 VNQDATYKFFEVILVDPS 138



 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 31/45 (68%), Positives = 35/45 (77%)
 Frame = +3

Query: 513 HKXIRRDPXINWIVNAVHKHXEMRGLTSAGXSSRGLGKGHXYSQT 647
           HK IRRDP INWIVN VHKH E RGLTS G  SRG+GKGH ++ +
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNS 183


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  141 bits (342), Expect = 1e-34
 Identities = 70/138 (50%), Positives = 85/138 (61%)
 Frame = +2

Query: 101 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 280
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 281 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 460
                              TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 461 VAQDSSYKYFEVILVDPS 514
           V QD++YK+FEVILVDPS
Sbjct: 121 VNQDATYKFFEVILVDPS 138



 Score = 75.8 bits (178), Expect = 8e-15
 Identities = 32/45 (71%), Positives = 35/45 (77%)
 Frame = +3

Query: 513 HKXIRRDPXINWIVNAVHKHXEMRGLTSAGXSSRGLGKGHXYSQT 647
           HK IRRDP INWIVN VHKH E RGLTS G  SRG+GKGH Y+ +
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNS 183


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 699 YVANDKHLSKTGSDFPFCLFL 761
           YVAND  LS  G   P C+FL
Sbjct: 244 YVANDATLSTLGRKLPNCIFL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,265
Number of Sequences: 5004
Number of extensions: 61310
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)