Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_J16
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 142 3e-34
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 140 1e-33
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 29 0.087
05_02_0037 + 5883285-5884292 31 0.90
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 31 1.6
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 30 2.1
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 29 4.8
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 142 bits (344), Expect = 3e-34
Identities = 69/136 (50%), Positives = 84/136 (61%)
Frame = +2
Query: 101 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 280
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 281 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 460
YGKPK G+ QLK RN +S+AEE +SYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 461 VAQDSSYKYFEVILVD 508
V +DS+YKYFE+ILVD
Sbjct: 121 VNEDSTYKYFEIILVD 136
Score = 65.3 bits (152), Expect = 6e-11
Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +3
Query: 513 HKXIRRDPXINWIVNAVHKHXEMRGLTSAGXSSRGL-GKGHXYSQTKGXSRRGSLGSNAT 689
H IR DP INW+ VHKH E+RGLTSAG RGL GKGH + + + SRR + N T
Sbjct: 139 HSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQT 197
Query: 690 L 692
+
Sbjct: 198 V 198
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 140 bits (339), Expect = 1e-33
Identities = 68/135 (50%), Positives = 83/135 (61%)
Frame = +2
Query: 104 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 283
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 284 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWV 463
YGKPK G+ QLK RN +S+AEE +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 464 AQDSSYKYFEVILVD 508
+DS+YKYFE+ILVD
Sbjct: 227 NEDSTYKYFEIILVD 241
Score = 65.3 bits (152), Expect = 6e-11
Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +3
Query: 513 HKXIRRDPXINWIVNAVHKHXEMRGLTSAGXSSRGL-GKGHXYSQTKGXSRRGSLGSNAT 689
H IR DP INW+ VHKH E+RGLTSAG RGL GKGH + + + SRR + N T
Sbjct: 244 HSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQT 302
Query: 690 L 692
+
Sbjct: 303 V 303
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 28.7 bits (61), Expect(2) = 0.087
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 488 FEVILVDPSQGH-SSRS*XQLDRECCT*ASRDAWSDFGWSQLP 613
FE+ILVD + QL + C A R WS W Q+P
Sbjct: 299 FEIILVDVAHSAIRDDPKDQLALQACAQARRAPWSHLCWQQVP 341
Score = 25.0 bits (52), Expect(2) = 0.087
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 341 YGKPKSHGVNQLKPTRN 391
Y KPK G+ QLK RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292
>05_02_0037 + 5883285-5884292
Length = 335
Score = 31.5 bits (68), Expect = 0.90
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 184 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 336
AV ++ AP ++ +A +SP C R CC +P + WWP+ GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 37 RFEFSFTVYCGTRETSATGC*DGCLQIYS 123
R TV G A GC DGCLQ+Y+
Sbjct: 651 RISAKVTVLAGNANFWAVGCEDGCLQVYT 679
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 400 GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 284
G +V G++ V +ALGL ++GT W L T +D++
Sbjct: 591 GSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 534 PXINWIVNAVHKHXEMRGLTSAGXSSRGLGKGHXYSQTKGXSRRGSLGSNA 686
P ++ VH+ RG ++AG R G S G SRR LG A
Sbjct: 264 PRVSGTKRPVHRGLGPRGWSTAGPRDRRSGSASGRSDGAGSSRRAWLGFKA 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,462,061
Number of Sequences: 37544
Number of extensions: 443094
Number of successful extensions: 937
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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