Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J16
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   8.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   8.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   8.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   8.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   8.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   8.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 81  VCHRLLRWVPTDI 119
           VCH  + W+PT +
Sbjct: 807 VCHNGMNWMPTHL 819


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -3

Query: 533 IATNXLVTGPRG*PRNTCMKNLVQPSKSSTHGDHRNDGQHA 411
           I++N L +  R   R +   +  + S+      +RNDG+ +
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERS 252


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -3

Query: 533 IATNXLVTGPRG*PRNTCMKNLVQPSKSSTHGDHRNDGQHA 411
           I++N L +  R   R +   +  + S+      +RNDG+ +
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERS 252


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -3

Query: 533 IATNXLVTGPRG*PRNTCMKNLVQPSKSSTHGDHRNDGQHA 411
           I++N L +  R   R +   +  + S+      +RNDG+ +
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERS 252


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -3

Query: 533 IATNXLVTGPRG*PRNTCMKNLVQPSKSSTHGDHRNDGQHA 411
           I++N L +  R   R +   +  + S+      +RNDG+ +
Sbjct: 212 ISSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERS 252


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -3

Query: 533 IATNXLVTGPRG*PRNTCMKNLVQPSKSSTHGDHRNDGQHA 411
           I++N L +  R   R +   +  + S+      +RNDG+ +
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERS 252


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -3

Query: 533 IATNXLVTGPRG*PRNTCMKNLVQPSKSSTHGDHRNDGQHA 411
           I++N L +  R   R +   +  + S+      +RNDG+ +
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERS 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,454
Number of Sequences: 438
Number of extensions: 4529
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)