Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J16
         (865 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           145   4e-35
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           144   7e-35
At1g03380.1 68414.m00317 expressed protein                             30   2.3  
At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloropla...    29   5.3  

>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  145 bits (351), Expect = 4e-35
 Identities = 83/205 (40%), Positives = 112/205 (54%), Gaps = 1/205 (0%)
 Frame = +2

Query: 101 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 280
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 281 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 460
                               YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 461 VAQDSSYKYFEVILVDPSQGHSSRS*XQLDREC-CT*ASRDAWSDFGWSQLPRSRQGTXI 637
           + +DS+YKY+E+ILVDP+  ++ R+  +++  C      R+        +  R  +G   
Sbjct: 121 LNEDSTYKYYEIILVDPAH-NAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGH 179

Query: 638 LXNKGXLTPGQPWLKRNTLQLRRKR 712
             +K   +    W K N+L LRR R
Sbjct: 180 NNHKNRPSRRATWKKNNSLSLRRYR 204


>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  144 bits (349), Expect = 7e-35
 Identities = 82/205 (40%), Positives = 112/205 (54%), Gaps = 1/205 (0%)
 Frame = +2

Query: 101 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 280
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 281 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 460
                               YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 461 VAQDSSYKYFEVILVDPSQGHSSRS*XQLDREC-CT*ASRDAWSDFGWSQLPRSRQGTXI 637
           + +DS+YKY+E+ILVDP+  ++ R+  +++  C      R+        +  R  +G   
Sbjct: 121 LNEDSTYKYYEIILVDPAH-NAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGH 179

Query: 638 LXNKGXLTPGQPWLKRNTLQLRRKR 712
             +K   +    W K N++ LRR R
Sbjct: 180 NNHKNRPSRRATWKKNNSISLRRYR 204


>At1g03380.1 68414.m00317 expressed protein
          Length = 926

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 588 LTSAGXSSRGLGKGHXYSQTKGXSRRGSLGSNA-TLFNYVANDKHLSKTGSDFPFCL 755
           L  AG  + G G GH +SQ    +R GS  S A    NY    +  S     + + L
Sbjct: 134 LVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINYPTTVRFYSLRSHSYVYVL 190


>At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloroplast
           (ARA6) (THI1) (THI4) identical to SP|Q38814 Thiazole
           biosynthetic enzyme, chloroplast precursor (ARA6)
           {Arabidopsis thaliana}
          Length = 349

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -1

Query: 397 LKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDS--EYNITLFSTVA*SSGFVRPCG 224
           +K+   +   D +  G  + G ++NW L A   HT S  + N+     V  S G   P G
Sbjct: 179 VKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFG 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,844,790
Number of Sequences: 28952
Number of extensions: 336418
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)