Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J11
         (1242 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   2.7  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   6.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   6.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   8.3  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
            protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 1161 PXPPXPPXPXPPXXP 1205
            P P  PP P PP  P
Sbjct: 176  PLPQVPPLPLPPIFP 190



 Score = 22.6 bits (46), Expect = 6.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 944 PPXPPPPPXPXXXXXPP 994
           PP P  PP P     PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 812 PPXPXHXXPRPXPPPRXXPXPPPP 883
           PP P    PRP    R  P PP P
Sbjct: 250 PPTPK---PRPTKVSRRKPRPPRP 270


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
            protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
 Frame = -3

Query: 1177 GXGGXGXGGGXGG---GXRGXXGGXE 1109
            G      GGG GG   G RG  GG E
Sbjct: 85   GENNDDSGGGRGGGRDGDRGDGGGEE 110


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
            (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 1152 PPXPXPPXPPXPXPPXXP 1205
            P    PP  P P PP  P
Sbjct: 110  PSGNVPPLTPSPGPPSHP 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,742
Number of Sequences: 336
Number of extensions: 3687
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36377394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)