Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J10
         (867 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida...    36   0.035
At5g39420.1 68418.m04775 protein kinase family protein contains ...    32   0.57 
At2g36640.1 68415.m04494 late embryogenesis abundant protein (EC...    31   0.75 
At2g28620.1 68415.m03479 kinesin motor protein-related                 31   1.3  
At3g56150.1 68416.m06241 eukaryotic translation initiation facto...    29   5.3  
At3g04750.1 68416.m00511 pentatricopeptide (PPR) repeat-containi...    28   7.0  
At5g07780.1 68418.m00890 formin homology 2 domain-containing pro...    28   9.3  
At2g01220.2 68415.m00035 expressed protein                             28   9.3  
At2g01220.1 68415.m00034 expressed protein                             28   9.3  
At1g26650.1 68414.m03245 expressed protein                             28   9.3  

>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
           putative / ACC oxidase, putative nearly identical to ACC
           oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
          Length = 320

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = +2

Query: 149 WPKVAMVRRDAP-DFFKDIEHHTKEFHKTL-EQQFNSLTKSKDAQDFSKAWKDGSESVLQ 322
           W    +V    P D    IE  TK+ +KT  EQ+FN + KSK   +     +D       
Sbjct: 34  WGFFEIVNHGLPHDLMDKIEKMTKDHYKTCQEQKFNDMLKSKGLDNLETEVEDVDWESTF 93

Query: 323 QLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEEL 436
            +    +S    + D + + + A++   + +E  AE+L
Sbjct: 94  YVRHLPQSNLNDISDVSDEYRTAMKDFGKRLENLAEDL 131


>At5g39420.1 68418.m04775 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 20/83 (24%), Positives = 40/83 (48%)
 Frame = +2

Query: 185 DFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALG 364
           D  +++  H  +  + + ++  SL  S    DFS+  +D  +  L+ L    +S+ G L 
Sbjct: 555 DVIEEVPSHESKLSR-IGERHGSLDGS--GLDFSQREEDSPKKTLEHLQFGKQSISGPLI 611

Query: 365 DANGKAKEALEQSRQNIERTAEE 433
             +GK  E L+++  NI +   +
Sbjct: 612 FKSGKIDEILQRNESNIRQAVRK 634


>At2g36640.1 68415.m04494 late embryogenesis abundant protein
           (ECP63) / LEA protein nearly identical to to LEA protein
           in group 3 [Arabidopsis thaliana] GI:1526424; contains
           Pfam profile PF02987: Late embryogenesis abundant
           protein
          Length = 448

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +2

Query: 194 KDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGS--ESVLQQLNAFAKSLQGALGD 367
           K IE   K   KT E +  ++ K+ + +D + + K G   +S ++        L G   +
Sbjct: 226 KAIEAKDKTAEKTGEYKDYTVEKATEGKDVTVS-KLGELKDSAVETAKRAMGFLSGKTEE 284

Query: 368 ANGKAKEALEQSRQNIERTAEELRK 442
           A GKA E  + +++N+E+  E  R+
Sbjct: 285 AKGKAVETKDTAKENMEKAGEVTRQ 309


>At2g28620.1 68415.m03479 kinesin motor protein-related 
          Length = 1076

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = +2

Query: 185 DFFKDIEHHTKEFHKTLEQQFNSLTK-SKDAQD-----FSKAWKDGSESVLQQLNAFAKS 346
           D  K +     +F KTL+   N LTK ++DAQ+      S   K   ES+  +     + 
Sbjct: 713 DSAKSVSTVMLDFFKTLDTHANKLTKLAEDAQNVNEQKLSAFTKKFEESIANEEKQMLEK 772

Query: 347 LQGALGDANGKAKEALEQSRQNIER 421
           +   L  +N + KE ++ + Q+I +
Sbjct: 773 VAELLASSNARKKELVQIAVQDIRQ 797


>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
           subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
           identical to SP|O49160 Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
           {Arabidopsis thaliana}
          Length = 900

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
 Frame = +2

Query: 158 VAMVRRDAPDFFKD---IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKA---WKDGSESVL 319
           VA + R   +FFK    I+ HT+E+ + L  +   L  +++ QD+ +    +K  ++  L
Sbjct: 357 VAFLERVDTEFFKSLQCIDPHTREYVERLRDEPMFLALAQNIQDYFERMGDFKAAAKVAL 416

Query: 320 QQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAE 430
           +++ A     Q  + DA  K  E +E+  +  E   E
Sbjct: 417 RRVEAIYYKPQ-EVYDAMRKLAELVEEEEETEEAKEE 452


>At3g04750.1 68416.m00511 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 661

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = -1

Query: 300 SFQALLKSCASFDLVSELNCCSKVLWNSLVWCSMSLKKSGASRRTIATLGQSDAGEENYE 121
           SF + +K      +VS        LWNSLV   M L   G + +  A +   D    N  
Sbjct: 144 SFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVM 203

Query: 120 LGGH 109
           + G+
Sbjct: 204 IVGY 207


>At5g07780.1 68418.m00890 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 464

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 443 PCGAPRPCARCSASTVPKPPWPCRSRLRALPGDSW 339
           P   PRPC+R   +     P     + RALPG  W
Sbjct: 61  PPPLPRPCSRPPKTKCSLKPLHWVKKTRALPGSLW 95


>At2g01220.2 68415.m00035 expressed protein 
          Length = 388

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 479 EGGGVLLDVQGGPCGAPRPCARCSASTVPKPP 384
           EG   LL+V    CG   PC   SA    KPP
Sbjct: 227 EGHLKLLEVAMSVCGGGYPCFEISAINADKPP 258


>At2g01220.1 68415.m00034 expressed protein 
          Length = 387

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 479 EGGGVLLDVQGGPCGAPRPCARCSASTVPKPP 384
           EG   LL+V    CG   PC   SA    KPP
Sbjct: 226 EGHLKLLEVAMSVCGGGYPCFEISAINADKPP 257


>At1g26650.1 68414.m03245 expressed protein
          Length = 335

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 364 SERSLETLGEGVELLQHGLGAVLPSLAEVLC 272
           S  +LE L E V +L++ LGA++ + A ++C
Sbjct: 24  SSNALEILRETVRILRYNLGALMLTTAVLIC 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,310
Number of Sequences: 28952
Number of extensions: 208332
Number of successful extensions: 774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)