Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J08
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    27   3.4  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   7.9  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   7.9  

>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 608 PGRLPDTCPPFSPSGSVAPFS*PHAVGISVSVLXRSLQAGCVPNPVQP 751
           P R   T P  S  GS A  + P   GI  ++   S  +  V NP+QP
Sbjct: 296 PLRPSMTGPVPSSMGSEATLNMPSTYGIDSNLYTNSNSSSIVQNPLQP 343


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 568 FPLEAPSCALLFRPW 612
           FPLE  +CA+ FR W
Sbjct: 177 FPLELTTCAITFRYW 191


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 568 FPLEAPSCALLFRPW 612
           FPLE  +CA+ FR W
Sbjct: 170 FPLELTTCAITFRYW 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,283
Number of Sequences: 5004
Number of extensions: 57934
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)