Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_J08
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0710 - 5355277-5355666 30 2.1
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 30 2.1
10_08_0223 - 15986763-15987575 30 2.7
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 30 2.7
08_02_0347 + 16065800-16065974,16066178-16066306,16067407-160674... 29 3.6
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 29 3.6
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.3
01_01_0033 + 260562-260661,260895-260941,261582-261681,261925-26... 29 6.3
11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421 28 8.3
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.3
>07_01_0710 - 5355277-5355666
Length = 129
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 683 QREAMRKAPRFPKGRKADRYPV--SGQGRNRRAHEGASRGKRLV 558
+R + + P P G +R SG+GR RR EGA G LV
Sbjct: 82 RRGRVARGPLAPAGESRERTSAANSGEGRRRRVAEGARDGSGLV 125
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 463 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP--WPLTGYLSA 636
CWR + T D Q + +KD P + PSC L+F P PL L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342
Query: 637 F 639
F
Sbjct: 343 F 343
>10_08_0223 - 15986763-15987575
Length = 270
Score = 29.9 bits (64), Expect = 2.7
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Frame = -1
Query: 648 EGEKGGQVSGKRPGSEQESARGSFQGE-TPGIFIVLSGFATS--DLSVDFCDARQGGGA- 481
EG GG G GS + G QG G I ++ +S D + + DA GGG
Sbjct: 138 EGGGGGGGGGSNGGSGYGAGAGVGQGAGESGSSIAMAPSPSSGGDYNGGYADAAGGGGGG 197
Query: 480 ---YGKTPATRPFYGSWPFAG 427
+G PA P YG AG
Sbjct: 198 GGGHGGGPAASPSYGVGAGAG 218
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 683 QREAMRKAPRFPKGRKADRYPVSGQGRNRRAHEGASRGKRLVS 555
QRE R+A P+G R ++G+ + RR + A+R +R VS
Sbjct: 32 QRELPRQATPPPRGTGDLRDQINGRRKARRTRDDANRSRRHVS 74
>08_02_0347 +
16065800-16065974,16066178-16066306,16067407-16067432,
16067474-16067557
Length = 137
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 701 PKLRYLQREAMRKAPRFPKGRKADR-YPVSGQGRNRRAHEGASRG 570
P +RY +R +R+ F +G R + +G GR R H+G + G
Sbjct: 14 PLVRYGRRPLVRQKWSFERGEGGKREHQQNGSGRGARPHQGRADG 58
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 560 PGVSPWKLP---RALSCSDPGRLPDTCPPFSPSGSVAPFS*PHA 682
PG SPW+ P +A G P PP+SP V P PH+
Sbjct: 173 PGGSPWRSPMQFQAPMSGYRGPPPGAPPPWSPHSGVPPPWNPHS 216
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 295 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 450
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>01_01_0033 +
260562-260661,260895-260941,261582-261681,261925-262181,
262525-262640,263014-263098,264236-264415,264740-264817,
264909-264970,265138-265246,266237-266514,266591-266657,
266734-266802,266880-266981,267309-267443
Length = 594
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = -1
Query: 729 HPAWSERXNTETEIPTA*GYEKGATLPEGEKGGQVSGKRPGSEQESARGSFQGETPGIFI 550
+P R +T++ G +G P G GG++SG P + SA+ S + + +
Sbjct: 510 NPRKKYRVKHQTKLVKRGGQVRGVKKPSGPYGGEMSGINPNWDYGSAQCSPRSRWMHLVV 569
Query: 549 VLSGFATSDLSVDFCD 502
V + S + + D
Sbjct: 570 VRASLCLSFMRDNMLD 585
>11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421
Length = 713
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +1
Query: 469 RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPWPLTGYLSAFLPF 648
+F + +T+I + G R L P +F W L G + LPF
Sbjct: 164 KFPLYGLTVTAILGLGGAYAAGSCRDSRHTGYVLGLIVPVLVCIFLQWFLVGSNAISLPF 223
Query: 649 GKRGA 663
G RG+
Sbjct: 224 GTRGS 228
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 244 NESAN---ARGEAVCVLGALPLPRSLTRCAR 327
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,358,877
Number of Sequences: 37544
Number of extensions: 462502
Number of successful extensions: 1522
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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