Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J08
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   2.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.8  

>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 556 DTRRFPLEAPSCALLFRPWPLTGY 627
           D   FP +  +C L F  W   G+
Sbjct: 156 DVEYFPFDEQTCVLKFGSWTYDGF 179


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 556 DTRRFPLEAPSCALLFRPWPLTGY 627
           D   FP +  +C + F  W   GY
Sbjct: 148 DVEYFPFDEQTCFMKFGSWTYDGY 171


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -2

Query: 671 MRKAPRF--PKGRKADRYPVSGQGRNRRAHEG 582
           +  APR   P G     Y +SG G+   A+EG
Sbjct: 19  LEDAPRVKTPLGAIKGYYKISGNGKQYEAYEG 50


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -2

Query: 671 MRKAPRF--PKGRKADRYPVSGQGRNRRAHEG 582
           +  APR   P G     Y +SG G+   A+EG
Sbjct: 19  LEDAPRVKTPLGAIKGYYKISGNGKQYEAYEG 50


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 565 RFPLEAPSCALLFRPW 612
           +FP +   C L+F  W
Sbjct: 148 KFPFDVQECPLIFESW 163


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +1

Query: 556 DTRRFPLEAPSCALLFRPWPLTGY 627
           D   FP +   C L +  W   GY
Sbjct: 134 DVEFFPFDEQRCVLKWASWTYDGY 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,166
Number of Sequences: 438
Number of extensions: 4682
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)