Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J07
         (837 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           27   0.24 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   1.7  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   4.0  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   5.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.1  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 294 YIRITQSQTQSIEHSSTTSYPHTYIXEGSKPYASSNLRGSVLAF*IT*LRCK 139
           Y  I  S  QSI  S + + P   + +  +P A +  R SVL    + LRCK
Sbjct: 19  YNVIQHSPQQSIIVSGSITQPTKTVIQSKRPLAPAPERTSVLVTNNSDLRCK 70


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -3

Query: 409 SIWGQEIPP*SSL*WENRTCTACSCKPPMVQGWSSCS--KIHQDYAKPDAEYRTQL-HHI 239
           +I+G  + P  +L +E      C+ + P V G   CS    ++D A    + R +  ++I
Sbjct: 79  AIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQIRQEKPYYI 138

Query: 238 LSPHIHXRGIKAL 200
             P +    ++A+
Sbjct: 139 ADPEVDSLMVQAI 151


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 349 YKFYSPIRDYSKEESPAPKY 408
           + FY+P R+  + + PAP Y
Sbjct: 238 FDFYTPKRNPKEADYPAPLY 257


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 349 YKFYSPIRDYSKEESPAPKY 408
           + FY+P R+  + + P+P Y
Sbjct: 246 FDFYTPARNPKEADYPSPLY 265


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 387 GISCPQILNCFSNIDQLYYENF 452
           G+S  Q+   F N+ + +YE F
Sbjct: 386 GLSLLQVAQIFKNLLENHYEEF 407


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,316
Number of Sequences: 336
Number of extensions: 2612
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)