Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J07
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.5  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    27   3.3  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    27   4.4  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 276 SQTQSIEHSSTTSYPHTYIXEGSKPYASS 190
           S++QS+  S T++ PHT     +KP ASS
Sbjct: 197 SKSQSVNSSVTSNPPHTEEPVAAKPEASS 225


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 355 FYSPIRDYSKEESPAPKY*TVFLILISC 438
           ++SP+ D+ K+E  AP Y  V +  ++C
Sbjct: 163 YFSPVNDHYKKEGLAPAYHRVRMCELAC 190


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 304 KKTNPEPWEAYR-NKQYKF 357
           K+ NP PW++++ N  YKF
Sbjct: 119 KELNPAPWDSFKHNSSYKF 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,363
Number of Sequences: 5004
Number of extensions: 40717
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)