Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J07
         (837 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8)                  31   1.2  
SB_29350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  

>SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8)
          Length = 406

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -1

Query: 402 GGRRFLLRVVSDGRIELVLLVPVSLPWFRVGLLVP-RYIRITQSQTQSIEHSSTTSYPHT 226
           G RR+  RV       L L  P++LP+ R   L P R + + ++  QS E        H 
Sbjct: 93  GPRRYATRVQKHDYARLTLKNPIALPFMRRHQLTPQRIMGVVETVVQSNEQFVLQGNFHL 152

Query: 225 YIXEGSKPYAS 193
           ++     PY +
Sbjct: 153 HVVGTHMPYGA 163


>SB_29350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +1

Query: 283 NPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPKY*TVFLILISCITRILVVL 462
           N + + N+K +P  W +Y           R +    SP+P Y T+ + +   IT I  + 
Sbjct: 81  NDEPNNNEKLDPTFWVSYTPTPLSHRYHHRHHHTSPSPSPPYITITITITITITTITTIT 140

Query: 463 S*INTI 480
           +   TI
Sbjct: 141 TITITI 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,653,235
Number of Sequences: 59808
Number of extensions: 326310
Number of successful extensions: 796
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)