Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J07
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical pr...    28   9.5  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    28   9.5  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    28   9.5  

>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 302  TRRPT---LNHGRLTGTSSTSSILPSETTLRRNLLPPNT 409
            T+RPT   L  G  + +SST S   S TT     LPP T
Sbjct: 950  TQRPTSPILTSGATSTSSSTESTTTSPTTSTTTTLPPTT 988


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -1

Query: 414 SLVFGGRRFLLRVVSDGRIELVLL-VPVSLPWFRVGLLVPRYIRITQSQTQSIEHSSTTS 238
           SLV  G + +L   +D R       VP  L +F       RY+  T +   SI HS+  S
Sbjct: 200 SLVTWGTQLILFGGNDNRRRCPFANVPPELHYFDTSTSTWRYVPATGNSPSSIGHSAVVS 259

Query: 237 YPHTYIXEGSKPYASSNL 184
             + ++  G  P+  + L
Sbjct: 260 GDYMFVY-GGWPFIHNEL 276


>Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical
           protein F10A3.5 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 241 CGGAVFYTLRLALRNPDVSWNKKTNPEPWEAY--RNKQYKFYSPIRDYSKEESPAPKY 408
           C  A+++   L L +P    +++  PE WE+Y  +  +Y +  P   Y+   +   K+
Sbjct: 141 CNSAIWFFCFLVLNSPSPMKDEELFPEFWESYCLKPNEYTYTGPHYYYTDNSTGEWKF 198


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +1

Query: 262 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPK 405
           +LR +L N        T      A RNKQ+  YS   D S+    APK
Sbjct: 728 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 775


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +1

Query: 262 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPK 405
           +LR +L N        T      A RNKQ+  YS   D S+    APK
Sbjct: 786 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 833


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,075,620
Number of Sequences: 27780
Number of extensions: 274222
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)