Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J07
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 829 KPXPPPXPPXXXGKXKXK 776
           KP PPP PP   G    K
Sbjct: 340 KPAPPPPPPSSSGPDSAK 357


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 214 LXYVCVGIGCGGAVFYTLR 270
           L  VC+GI C G    T+R
Sbjct: 6   LLVVCLGIACQGITSVTVR 24


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 315 VGLLVPRYIRITQSQTQSIEHSSTTSYPHTYIXEGSKPYASSNLR 181
           VGL +PRY     S   +    +T+     +I + +K   S + R
Sbjct: 531 VGLKMPRYCLFGDSVNTASRMEATSQAMQIHISQSTKELLSPSYR 575


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,916
Number of Sequences: 438
Number of extensions: 4630
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)