Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J07
         (837 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in...    31   1.3  
At3g49210.1 68416.m05378 expressed protein                             30   2.2  
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein...    29   2.9  
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ...    29   3.8  
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ...    29   5.1  
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    28   6.7  
At2g22030.1 68415.m02615 kelch repeat-containing F-box family pr...    28   6.7  
At1g15980.1 68414.m01917 expressed protein                             28   6.7  

>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 373

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 405 ILNCFSNIDQLYYENFSCIKL 467
           +LNC + + + YYEN SC+ +
Sbjct: 19  VLNCLARVPRRYYENISCVSV 39


>At3g49210.1 68416.m05378 expressed protein
          Length = 518

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 324 WFRVGLLVPRYIRITQSQTQSIEHSSTTSYPHTYI 220
           W R  ++V  ++ ++  QTQ+IE+ +  ++  TY+
Sbjct: 92  WVRTNVVVTDHVIVSDIQTQNIENGNADAFLETYV 126


>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 535

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 280 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDY 378
           R  +V +N    PE  EAYR K+     P++D+
Sbjct: 502 RKYNVKYNNDVTPEEMEAYRMKRVHHEDPMKDF 534


>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 822

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 364 ENRTCTACSCKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHI 224
           EN+ C AC+  P     + SC +      +  A +R ++HH   PH+
Sbjct: 552 ENKLCQACTT-PIYFGNFFSCMQCDFILHEKCANFRRKIHHPTHPHL 597


>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 700

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 364 ENRTCTACSCKPPMVQG-WSSCSKIHQDYAKPDAEYRTQLHHILSPHI 224
           EN+ C AC    P+  G + SC K +    +  A +  ++HH + PH+
Sbjct: 422 ENKLCQACIT--PIYSGKFYSCMKCNFILHEECANFSRKIHHPIHPHM 467


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
           transcription factor (HUA2) - Arabidopsis thaliana,
           EMBL:AF116556
          Length = 1445

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -1

Query: 291 IRITQSQTQSIEHSSTTSYPHTYIXEGS 208
           +  T+ + Q++EH+S +S+P + + EG+
Sbjct: 398 VAYTKRRKQTVEHTSVSSFPGSLVKEGA 425


>At2g22030.1 68415.m02615 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 383

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 405 ILNCFSNIDQLYYENFSCI 461
           +LNC + + + YY N SC+
Sbjct: 34  VLNCLARVSRRYYPNLSCV 52


>At1g15980.1 68414.m01917 expressed protein
          Length = 461

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +1

Query: 259 YTLRLALRNPDVSWN--KKTNP--EPWEAYRNKQYKFYSPIRDYSKEESPAP 402
           +  RL  R+ DVS N  KK NP  +P+++  +   ++ S   D  ++E P P
Sbjct: 32  FQTRLTSRSSDVSVNLKKKNNPWLDPFDSGEDPDNEYGSLFADGKQDEDPRP 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,142,743
Number of Sequences: 28952
Number of extensions: 236955
Number of successful extensions: 643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)