Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J06
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    75   1e-14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.62 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   7.6  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 30/45 (66%), Positives = 41/45 (91%)
 Frame = +3

Query: 222 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFL 356
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL 72


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXPPPPPPP 790
           PP  P     P P           PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
 Frame = +2

Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXP----PPPPPP 790
           PP  PP    P P           P    PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +2

Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXPPPPPPP 790
           PP        P P           PPPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 219 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 94
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760



 Score = 23.8 bits (49), Expect(2) = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 770 PPPPPPP 790
           PPPPPPP
Sbjct: 238 PPPPPPP 244



 Score = 21.4 bits (43), Expect(2) = 3.1
 Identities = 9/29 (31%), Positives = 9/29 (31%)
 Frame = +2

Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXPPPPP 784
           P   PP    P             PPPPP
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +2

Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXPPPPPPP 790
           PP  P       P           PPPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 5.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 770 PPPPPPP 790
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 20.6 bits (41), Expect(2) = 5.7
 Identities = 9/29 (31%), Positives = 9/29 (31%)
 Frame = +2

Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXPPPPP 784
           PP  PP    P             P PPP
Sbjct: 267 PPNSPPRPIAPVSMNPAINSTSKPPLPPP 295


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 710 PPXXXXPXPXXXXXXXXXXXPPPPPP 787
           PP    P P           PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 713 PXXXXPXPXXXXXXXXXXXPPPPPPP 790
           P    P P           PPPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 31  NSLRFKLLGCLTCLSEPIVQQWRTLLQ 111
           NSL      C+T L + ++ Q ++LLQ
Sbjct: 537 NSLETSYYNCMTVLEDEVIAQLKSLLQ 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,963
Number of Sequences: 5004
Number of extensions: 28778
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)