Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_J06
(836 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 68 1e-11
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.19
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.19
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.19
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 26 0.42
Z81543-3|CAB04425.1| 322|Caenorhabditis elegans Hypothetical pr... 25 1.8
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 26 3.5
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 25 3.8
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 25 3.8
U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical pr... 26 3.9
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 5.4
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 5.4
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 5.4
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 7.2
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 28 7.2
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 7.2
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 28 7.2
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 25 9.3
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 28 9.5
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 28 9.5
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 67.7 bits (158), Expect = 1e-11
Identities = 44/87 (50%), Positives = 54/87 (62%)
Frame = +3
Query: 225 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGSSLX**RXLKNHALX 404
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L S+L LK +
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIID-ALCSNLK-DEVLKISPV- 108
Query: 405 XKKXXXGKGQRFQGXFLPLGXXXGXIG 485
K+ G+ RF+ F+ +G G +G
Sbjct: 109 QKQTTAGQRTRFKA-FVAIGDHAGHVG 134
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXPPPPPPP 790
PP PP P P PPPPPPP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXPPPPPPP 790
PP PP P P PPPPPP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Frame = +2
Query: 698 PPXXPP--XXXXPXPXXXXXXXXXXXPPPPPPP 790
PP PP P P PPPPPPP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXPPPPPPP 790
PP PP P P PPPPPPP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXPPPPPPP 790
PP PP P P PPPPPP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Frame = +2
Query: 698 PPXXPP--XXXXPXPXXXXXXXXXXXPPPPPPP 790
PP PP P P PPPPPPP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXPPPPPPP 790
PP PP P P PPPPPPP
Sbjct: 343 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXPPPPPPP 790
PP PP P P PPPPPP
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Frame = +2
Query: 698 PPXXPP--XXXXPXPXXXXXXXXXXXPPPPPPP 790
PP PP P P PPPPPPP
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 331
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 26.2 bits (55), Expect(2) = 0.42
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 771 PPPPPPXPXXXXXPXXP 821
PPPPPP P P P
Sbjct: 1341 PPPPPPPPSDDLTPVPP 1357
Score = 24.6 bits (51), Expect(2) = 0.42
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 765 SXPPPPPPXP 794
S PPPPPP P
Sbjct: 1337 SPPPPPPPPP 1346
>Z81543-3|CAB04425.1| 322|Caenorhabditis elegans Hypothetical
protein F49B2.3 protein.
Length = 322
Score = 24.6 bits (51), Expect(2) = 1.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 765 SXPPPPPPXP 794
S PPPPPP P
Sbjct: 262 SQPPPPPPPP 271
Score = 24.2 bits (50), Expect(2) = 1.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +3
Query: 771 PPPPPPXPXXXXXP 812
PPPPPP P P
Sbjct: 265 PPPPPPPPEVSIAP 278
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 26.2 bits (55), Expect(2) = 3.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 771 PPPPPPXPXXXXXPXXP 821
PPPPPP P P P
Sbjct: 576 PPPPPPPPPMLGGPPPP 592
Score = 21.4 bits (43), Expect(2) = 3.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 765 SXPPPPPPXP 794
S PPPPP P
Sbjct: 573 SGAPPPPPPP 582
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 24.6 bits (51), Expect(2) = 3.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 765 SXPPPPPPXP 794
S PPPPPP P
Sbjct: 153 SAPPPPPPPP 162
Score = 23.0 bits (47), Expect(2) = 3.8
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +3
Query: 771 PPPPPPXPXXXXXPXXP 821
PPPPPP P P
Sbjct: 158 PPPPPPVSVPSSKPTPP 174
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 24.6 bits (51), Expect(2) = 3.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 765 SXPPPPPPXP 794
S PPPPPP P
Sbjct: 153 SAPPPPPPPP 162
Score = 23.0 bits (47), Expect(2) = 3.8
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +3
Query: 771 PPPPPPXPXXXXXPXXP 821
PPPPPP P P
Sbjct: 158 PPPPPPVSVPSSKPTPP 174
>U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical
protein F47B3.4 protein.
Length = 281
Score = 26.2 bits (55), Expect(2) = 3.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 771 PPPPPPXPXXXXXPXXP 821
PPPPPP P P P
Sbjct: 53 PPPPPPAPKVPEPPKAP 69
Score = 21.4 bits (43), Expect(2) = 3.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 765 SXPPPPPPXP 794
S PPPPP P
Sbjct: 49 SAEPPPPPPP 58
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 710 PPXXXXPXPXXXXXXXXXXXPPPPPPP 790
PP P P PPPPPPP
Sbjct: 630 PPPPPPPPPMGLPAVGAGAPPPPPPPP 656
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 710 PPXXXXPXPXXXXXXXXXXXPPPPPPP 790
PP P P PPPPPPP
Sbjct: 456 PPPPPPPPPMGLPAVGAGAPPPPPPPP 482
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 710 PPXXXXPXPXXXXXXXXXXXPPPPPPP 790
PP P P PPPPPPP
Sbjct: 67 PPPPPPPPPLISILQQAPPPPPPPPPP 93
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 789 GGGGGGGXXXXXXXXXXXGXGXXXXGGXXGG 697
GGGGGGG G G GG GG
Sbjct: 142 GGGGGGGCGGGGGGCGGGGGGCGGGGGGCGG 172
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 789 GGGGGGGXXXXXXXXXXXGXGXXXXGGXXGG 697
GGGGGGG G G GG GG
Sbjct: 97 GGGGGGGRGGGGGGRGGGGGGGGGRGGGGGG 127
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Frame = +2
Query: 698 PPXXPPXXXXPXPXXXXXXXXXXXP--PPPPPP 790
PP PP P P P PPPPPP
Sbjct: 48 PPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 789 GGGGGGGXXXXXXXXXXXGXGXXXXGGXXGG 697
GGGGGGG G G GG GG
Sbjct: 56 GGGGGGGGGGFGGGNGGFGGGGGGSGGGGGG 86
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 24.6 bits (51), Expect(2) = 9.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 765 SXPPPPPPXP 794
S PPPPPP P
Sbjct: 790 SEPPPPPPPP 799
Score = 21.4 bits (43), Expect(2) = 9.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +3
Query: 774 PPPPPXPXXXXXP 812
PPPPP P P
Sbjct: 792 PPPPPPPPVATAP 804
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 58 CLTCLSEPIVQQWRTLLQPVDVA 126
CLT +E +VQ WR+LL P D +
Sbjct: 146 CLT--AEKLVQTWRSLLHPTDAS 166
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 58 CLTCLSEPIVQQWRTLLQPVDVA 126
CLT +E +VQ WR+LL P D +
Sbjct: 146 CLT--AEKLVQTWRSLLHPTDAS 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,570
Number of Sequences: 27780
Number of extensions: 200507
Number of successful extensions: 3758
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2323
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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