Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J05
         (914 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   4.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.8  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   7.7  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/39 (28%), Positives = 11/39 (28%)
 Frame = +3

Query: 663 PXXPXPPPPXXXXXXPXPXXPXXXXXXXXXPXPPPPPXP 779
           P  P   PP      P    P         P  PP P P
Sbjct: 65  PIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSP 103


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 305 PNPRTSIAGPALTMPSRMFL 246
           P+P TS+A P++++ S   L
Sbjct: 702 PSPSTSVASPSVSVASPYML 721


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 305 PNPRTSIAGPALTMPSRMFL 246
           P+P TS+A P++++ S   L
Sbjct: 594 PSPSTSVASPSVSVASPYML 613


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 449 NVCQSFLSDKRYVVKLKIN 505
           ++CQ   S K+ +VK+KI+
Sbjct: 312 DLCQEANSTKKLIVKIKID 330


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,624
Number of Sequences: 336
Number of extensions: 2960
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25547951
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)