Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J04
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1377 - 33064906-33065607                                         31   1.5  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    30   2.7  
08_02_0707 - 20212190-20214592                                         29   6.2  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   8.2  

>04_04_1377 - 33064906-33065607
          Length = 233

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 395 PVQRHR-LHFHGHVHEFQHQHLVPVHRHRLHFHVHEFQHQ 279
           P   HR    H H H   H HL P H    H H HE +HQ
Sbjct: 171 PTTHHRERQKHHHHHHHHHPHLQP-HGEEQHHH-HEQKHQ 208


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 389 QRHRLHFHGHVHEFQHQHLVPVHRHRLHFHVHEFQHQY 276
           Q H   +  H H+ Q++H     ++R+HF  H  Q QY
Sbjct: 148 QNHHQQYQQHHHQQQYEH-----QNRIHFQHHRQQQQY 180


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -3

Query: 374 HFHGHVHEFQHQHLVPVHRHRLHFHVHEFQHQY 276
           H H H H   H H    H H  H H HE  H +
Sbjct: 498 HSHSHSHSHSHSHS---HSHS-HVHGHEDHHNH 526


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 389 QRHRLHFHGHVHEFQHQHLVPVHRHRLHFHVHE 291
           Q+ R H H H H  +H H    H H  H   H+
Sbjct: 531 QKGRHHRHHHDHRHRHGHSHGDHHHHYHGGHHQ 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,013,363
Number of Sequences: 37544
Number of extensions: 85665
Number of successful extensions: 333
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)