Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_J04
(853 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 35 0.079
At2g04620.1 68415.m00470 cation efflux family protein potential ... 32 0.56
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 31 1.3
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 31 1.3
At2g43970.2 68415.m05468 La domain-containing protein contains P... 31 1.3
At2g43970.1 68415.m05467 La domain-containing protein contains P... 31 1.3
At2g36710.1 68415.m04504 pectinesterase family protein contains ... 30 1.7
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 30 2.2
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 29 3.0
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 5.2
At1g15730.1 68414.m01887 PRLI-interacting factor L, putative str... 28 9.1
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 34.7 bits (76), Expect = 0.079
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 374 HFHGHVHEFQHQHLVPVHRHRLHFHVHEFQHQ 279
H +GH H F HQ H H H H++ + +Q
Sbjct: 540 HHNGHHHPFDHQMNQSAHHHHHHQHINHYHNQ 571
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 389 QRHRLHFHGHVHEFQHQHLVPVHRHRLHFHVHEFQH 282
+ H H H HE HQH H+H H H H+ H
Sbjct: 568 EEHHQHSDSHKHEEHHQH-SDSHKHEEH-HEHDHHH 601
Score = 31.5 bits (68), Expect = 0.74
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 389 QRHRLHFHGHVHEFQHQHLVPVHRHRLHFHVHE 291
+ H H H HE H+H H H H H HE
Sbjct: 580 EEHHQHSDSHKHEEHHEH---DHHHHSHSHKHE 609
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 374 HFHGHVHEFQHQHLVPVHRHRLHFHVHEFQHQ 279
H H HE H H H+H H H+ +HQ
Sbjct: 589 HKHEEHHEHDHHHHSHSHKHEECNHNHDHEHQ 620
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -3
Query: 383 HRLHFHGHVHE-FQHQHLVPVHRHRLHFHVHE 291
H H H H HE H H H H+ H H HE
Sbjct: 599 HHHHSHSHKHEECNHNH---DHEHQSHSHNHE 627
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -3
Query: 374 HFHGHVHEFQHQHLVPVHRHRLHFHVHEFQHQY 276
H HGH H H H V V H H H HE H +
Sbjct: 192 HGHGHDHH-NHSHGVTVTTHH-HHHDHEHGHSH 222
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Frame = -3
Query: 374 HFHGHVHEFQ-HQHLVPV---HRHRLHFHVHEFQH 282
H HGH H+ H H V V H H H H H H
Sbjct: 190 HGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -3
Query: 374 HFHGHVHEFQHQHLVPVHRHRLHFHVHEFQHQY 276
H HGH H H H V V H H H HE H +
Sbjct: 192 HGHGHDHH-NHSHGVTVTTHH-HHHDHEHGHSH 222
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Frame = -3
Query: 374 HFHGHVHEFQ-HQHLVPV---HRHRLHFHVHEFQH 282
H HGH H+ H H V V H H H H H H
Sbjct: 190 HGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = -3
Query: 398 VPVQRHRLH--FHGHVHEFQHQH--LVPVHRH 315
VPVQ H H FH H H +HQ+ VPV H
Sbjct: 106 VPVQNHHPHHRFHQHHHHNRHQNQQYVPVRNH 137
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = -3
Query: 398 VPVQRHRLH--FHGHVHEFQHQH--LVPVHRH 315
VPVQ H H FH H H +HQ+ VPV H
Sbjct: 106 VPVQNHHPHHRFHQHHHHNRHQNQQYVPVRNH 137
>At2g36710.1 68415.m04504 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 407
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 371 FHGHVHEFQHQHLVPVHRHRLHFHVHE 291
F GH H H H H H H+H HE
Sbjct: 47 FFGHKHHHHHHH----HHHHHHYHHHE 69
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 392 VQRHRLHFHGHVHEFQHQHLVPVHRHRLHFHVHEFQHQYL 273
+ H+LH H H H+ Q QH H H H + QHQ +
Sbjct: 142 IPNHQLHPHPH-HQQQQQH-----NHHHHHHQQQQQHQQM 175
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3
Query: 395 PVQRHRLHFHGHVHEFQHQHLVPVHRHRLHFH 300
P +H H H H H H H H H H H
Sbjct: 327 PHSKHHHHHHHHHHHHHHHH----HNHHHHHH 354
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 383 HRLHFHGHVHEFQHQHLVPVHRHRLHFHVH 294
H H H H H H H H H H H H
Sbjct: 328 HSKHHHHHHHHHHHHH----HHHHNHHHHH 353
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = -3
Query: 395 PVQRHRLHFHGHVHEFQHQHLVPVHRHRLHFHVH 294
P + H H H H H H H H H H H
Sbjct: 325 PSPHSKHHHHHHHHHHHHHH----HHHNHHHHHH 354
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -3
Query: 383 HRLHFHGHVHEFQHQHLVPVH-RHRLHFHVHEFQH 282
H H H H H+ H H H H H H H+ H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHHHSHDHTH 345
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = -3
Query: 374 HFHGHVHEFQHQHLVPV-HRHRLHFHVHE 291
H H H H+ H H H H H H H+
Sbjct: 318 HHHDHNHDHDHHHHDGHDHHHHSHDHTHD 346
>At1g15730.1 68414.m01887 PRLI-interacting factor L, putative strong
similarity to PRLI-interacting factor L GI:11139268 from
[Arabidopsis thaliana]; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 448
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 383 HRLHFHGHVHEFQHQHLVPVHRHRLHFHVHE 291
H H H + HE +H+H H H H H+
Sbjct: 324 HDCHDHHNEHEHEHEH----EHHHSHDHTHD 350
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,586,900
Number of Sequences: 28952
Number of extensions: 66233
Number of successful extensions: 330
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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