Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_J03
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 30 0.35
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 29 0.61
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 29 0.80
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 27 3.2
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 27 3.2
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 27 4.3
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 4.3
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 26 5.6
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 26 5.6
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 7.5
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 25 9.9
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 30.3 bits (65), Expect = 0.35
Identities = 23/92 (25%), Positives = 38/92 (41%)
Frame = +1
Query: 232 QGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDTGLDQP 411
+ + P+AP + P +D L P + R V N + + I SH +DQ
Sbjct: 83 EANESPKAPRNDYLQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSH------VDQI 136
Query: 412 IESHRNTRDLRFLYPRGKLPVPTLPPFNPKPI 507
+ NT ++ +PT P NP+P+
Sbjct: 137 SDIKHNTSEI------SSTMIPTTPSKNPEPV 162
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 29.5 bits (63), Expect = 0.61
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 526 RYRRHASDDQEELRQYNEHFLISEGYF 606
RY+R AS+ E L +++ HF IS+ F
Sbjct: 99 RYKRDASESDELLNEFSNHFGISDPLF 125
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 29.1 bits (62), Expect = 0.80
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -3
Query: 667 SMNIGVHXEIFCFWNFPYSWENIPRKSESAHYIAAILLDHPTHVVGNGFPYQYILA 500
S+NI + ++ + P +S+HY+A L+HPT NG PY + +
Sbjct: 339 SLNIYLFSAFLAINGVVLAFTSSPGFVQSSHYVAEYELEHPTFFGHNG-PYTQLFS 393
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 538 HASDDQEELRQYNEHFLISEGYFPKNRESSRNKRF--RSALLYSLNRNYSSXXDILN 702
HA+ Q + YN HF + ++ +N ++ +A+ ++N N+ S ++L+
Sbjct: 100 HAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Frame = +1
Query: 439 LRFLYPRGKLPVPTLPPFNPKPIYIDMGNRYRRHAS---DDQEELRQYNEHFLISEGYFP 609
+R L P P +P P+Y D H+ D + ++R+Y IS
Sbjct: 580 IRLLLPLKNFPESLIPYL---PVYCDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVT 636
Query: 610 KNRESSRNKRFRSALLYSLNRNYSSXXDILNSS 708
N + S+ + + Y+L++N +++N +
Sbjct: 637 NNSDVSKYELGIAISGYALDKNVGKLVELINKA 669
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.6 bits (56), Expect = 4.3
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +1
Query: 280 LPSKIDDVQLDPN--RRYVRSVTNPENNEASIEHSHHTVDTGLDQPIESHRNTRDLRFLY 453
LP + + L+ N R Y TN +N + + + L ES N +Y
Sbjct: 395 LPGEANFQSLNQNNVRNYPFYQTNQGSNPPAKRFTQEPPSSSLYSLSESSINYSTQSPMY 454
Query: 454 PRGKLPVPTLPPFNPKPIYID 516
P P+ PPF+ PIY D
Sbjct: 455 YNYNYPQPSFPPFH--PIYND 473
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -2
Query: 371 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGARGTLS 237
S + SLFS R RF F G++GW +LG+ S
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGSGSPFS 393
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 238 HLDTAIAVPGQLVALYVLSGAVLAVA*RSAG*TSGTK---PEQRTAPELN 98
H D IAVPG L+ + L A R G G+K PE T E+N
Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEIN 354
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +1
Query: 475 PTLPPFNPKPIYIDMGNRYRRHASDDQEELRQYNEHFLISEGYFPKNRESSRNKRFRS 648
PTL P P+ G R + S + +R N+H ++ P +R + +S
Sbjct: 664 PTLLVLKPFPLKPQDGQRVNKQQSVNAGNVRTNNKHGSLNNNTAPSSRNAKSTSAHKS 721
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 301 RRRFSKEESDGLQYLAHEE-HCHLDTAIAVP 212
RRR+SK+ S L+ + +EE H L + I +P
Sbjct: 946 RRRYSKQHSKHLESVVYEEYHPILHSNITIP 976
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 649 HXEIFCFWNFPYSWENIPRKSESAHYIAAILLDH 548
H I+ PY+W ++ S A YI LL +
Sbjct: 705 HNNIYQISQEPYTWSSVAEASRRAMYIRYSLLPY 738
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,866
Number of Sequences: 5004
Number of extensions: 71278
Number of successful extensions: 261
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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