Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J03
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665...    32   0.64 
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    31   0.84 
01_05_0560 - 23288078-23288370,23288448-23288733                       30   2.6  
12_01_0934 - 9273325-9273807,9273898-9274062,9274155-9274235,927...    29   3.4  
04_04_0766 - 27923120-27923554,27923843-27924580,27924815-279248...    29   4.5  
01_01_0206 - 1770622-1771347                                           29   4.5  

>09_04_0727 + 19765175-19765384,19765523-19765595,19766476-19766570,
            19766666-19768450,19768533-19768721,19768816-19768958,
            19769075-19769320,19769975-19770059,19770117-19770191,
            19770304-19770369,19770466-19770712,19770824-19771242
          Length = 1210

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 472  VPTLPPFNPKPIYIDMGNRYRRHASDD-QEELRQYNEHFL-ISEGY 603
            +P LP  NP+P+  D G      ASDD  E+L      F+ ++ GY
Sbjct: 1119 LPELPELNPEPMVTDNGENAAMPASDDIPEQLEVVKRRFMELTTGY 1164


>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 247  PRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHT 387
            P  P T  H I  S +DD+     R  VR   +P+N ++ +  S +T
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110


>01_05_0560 - 23288078-23288370,23288448-23288733
          Length = 192

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 244 VPRAPSTADHPILPSKIDDVQLDPNRRYVRS 336
           +PR P  A H +L S  DDV  DP+ RYV S
Sbjct: 120 LPR-PLRAGHYVLSSPPDDVDHDPDHRYVFS 149


>12_01_0934 -
           9273325-9273807,9273898-9274062,9274155-9274235,
           9274347-9274475,9274590-9274661,9274758-9274826,
           9275143-9275514,9275590-9275703,9275729-9275848
          Length = 534

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +1

Query: 457 RGKLPVPTLPPFNPKPIYIDMG--NRYRRHASDDQEELRQYNEHFLISEGYFPKNRESSR 630
           R KLP  T  P  P P+    G  N+ R+H    +E +  + + +L      P  R SS 
Sbjct: 424 RNKLPSTTTSPMKPLPVETKRGPLNQERKHIMTGKEIVPVFTKSWLSGS---PTARLSSP 480

Query: 631 NKRF 642
            +RF
Sbjct: 481 RRRF 484


>04_04_0766 -
           27923120-27923554,27923843-27924580,27924815-27924874,
           27925281-27925328
          Length = 426

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 156 LQATANTAPDNTYSATSWPGTAMAVSR*QCSSCAKYCRPSDSSFENRRRAARS 314
           L  T++ APD   +A +     + V+    SS    CRPS SSF   +R A S
Sbjct: 154 LVPTSSPAPDQAPAAEATDVDDVVVAALDSSSIDGSCRPSPSSFVAWKRTADS 206


>01_01_0206 - 1770622-1771347
          Length = 241

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 448 LYPRGKL-PVPTLPPFNPKP 504
           L+  GKL PVP LPP +PKP
Sbjct: 68  LFAGGKLLPVPPLPPVHPKP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,072,917
Number of Sequences: 37544
Number of extensions: 476074
Number of successful extensions: 1416
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)