Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J03
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    30   2.3  
U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation fact...    29   4.0  
U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation fact...    29   4.0  
U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation fact...    29   4.0  
U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation fact...    29   4.0  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    28   9.3  

>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
 Frame = +1

Query: 241 NVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDTGLDQPIES 420
           N+  +PS   HP  PS    +     RR  RS  +PE+ E+  E S  T+++G ++    
Sbjct: 91  NLDMSPSRR-HPGRPSSSATISNSARRRRYRSCNSPEHLES--ESSQLTLESGSEEFRSL 147

Query: 421 HRNTRDLR---FLYPRGKLP---VPTLPPFNPKPIYI 513
            R  R L    F  P   +    +P    FN  P YI
Sbjct: 148 PRYIRQLNQRDFGSPSNSITNGYIPDSVDFNSLPRYI 184


>U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1B isoform protein.
          Length = 760

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 337 HCEHTFGLDRAARRRFSKEESDGLQYLAHEEHCHLDTAIAVPGQL 203
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1A isoform protein.
          Length = 768

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 337 HCEHTFGLDRAARRRFSKEESDGLQYLAHEEHCHLDTAIAVPGQL 203
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform a protein.
          Length = 768

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 337 HCEHTFGLDRAARRRFSKEESDGLQYLAHEEHCHLDTAIAVPGQL 203
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform b protein.
          Length = 760

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 337 HCEHTFGLDRAARRRFSKEESDGLQYLAHEEHCHLDTAIAVPGQL 203
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 505 IYIDMGNRYRRHASDDQEELRQYNEHFLISEGYFPKNRESSRN 633
           +Y+D   R  ++  +  EE R+Y   FL S G+ P + +   N
Sbjct: 775 VYLDDVRRSLKNVRETIEETRKYEIRFLDSLGFMPSSLDCLSN 817


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,157,158
Number of Sequences: 27780
Number of extensions: 408548
Number of successful extensions: 1330
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)