Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J03
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    24   2.0  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    23   2.6  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    23   2.6  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    23   2.6  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    23   2.6  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    23   2.6  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    23   2.6  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    23   2.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.6  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   4.5  

>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +1

Query: 523 NRYRRHASDDQEELRQYNEHFLISEGYFPKNRESSRNKRFRSALLYSLNRNYSSXXDILN 702
           +R R    +  +  R+Y ++   S+      RE  R+K  +     S N NYS+  +  N
Sbjct: 40  SRSREREQNSYKNEREYRKYRETSKERSRDRRERERSKEPKIVSSLSNNYNYSNYNNYNN 99

Query: 703 SS 708
           ++
Sbjct: 100 NN 101


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +1

Query: 523 NRYRRHASDDQEELRQYNEHFLISEGYFPKNRESSRNKRFRSALLYSLNRNYSSXXDILN 702
           +R R    +  +  R+Y ++   S+      RE  R+K  +     S N NYS+  +  N
Sbjct: 40  SRSREREQNSYKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNNYNN 99

Query: 703 SS 708
           ++
Sbjct: 100 NN 101


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +1

Query: 523 NRYRRHASDDQEELRQYNEHFLISEGYFPKNRESSRNKRFRSALLYSLNRNYSSXXDILN 702
           +R R    +  +  R+Y ++   S+      RE  R+K  +     S N NYS+  +  N
Sbjct: 40  SRSREREQNSYKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNNYNN 99

Query: 703 SS 708
           ++
Sbjct: 100 NN 101


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +1

Query: 523 NRYRRHASDDQEELRQYNEHFLISEGYFPKNRESSRNKRFRSALLYSLNRNYSSXXDILN 702
           +R R    +  +  R+Y ++   S+      RE  R+K  +     S N NYS+  +  N
Sbjct: 40  SRSREREQNSYKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNNYNN 99

Query: 703 SS 708
           ++
Sbjct: 100 NN 101


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +1

Query: 523 NRYRRHASDDQEELRQYNEHFLISEGYFPKNRESSRNKRFRSALLYSLNRNYSSXXDILN 702
           +R R    +  +  R+Y ++   S+      RE  R+K  +     S N NYS+  +  N
Sbjct: 40  SRSREREQNSYKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNNYNN 99

Query: 703 SS 708
           ++
Sbjct: 100 NN 101


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +1

Query: 523 NRYRRHASDDQEELRQYNEHFLISEGYFPKNRESSRNKRFRSALLYSLNRNYSSXXDILN 702
           +R R    +  +  R+Y ++   S+      RE  R+K  +     S N NYS+  +  N
Sbjct: 40  SRSREREQNSYKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNNYNN 99

Query: 703 SS 708
           ++
Sbjct: 100 NN 101


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +1

Query: 523 NRYRRHASDDQEELRQYNEHFLISEGYFPKNRESSRNKRFRSALLYSLNRNYSSXXDILN 702
           +R R    +  +  R+Y ++   S+      RE  R+K  +     S N NYS+  +  N
Sbjct: 40  SRSREREQNSYKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNNYNN 99

Query: 703 SS 708
           ++
Sbjct: 100 NN 101


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +1

Query: 523 NRYRRHASDDQEELRQYNEHFLISEGYFPKNRESSRNKRFRSALLYSLNRNYSSXXDILN 702
           +R R    +  +  R+Y ++   S+      RE  R+K  +     S N NYS+  +  N
Sbjct: 40  SRSREREQNSYKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNNYNN 99

Query: 703 SS 708
           ++
Sbjct: 100 NN 101


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 240 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQCHQS 347
           QC  C+K     ++   +RR   + +P  C  C ++
Sbjct: 121 QCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERA 156



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +3

Query: 240 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQC 338
           +C+ C+K    S     + R     KP VC  C
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKAC 209


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -3

Query: 667 SMNIGVHXEIFCFW--NFPYSWENIPRKSESAHY 572
           S  IG+   +  F   N+PY W+ I R+ +   Y
Sbjct: 70  SRQIGIANTLIPFMQQNYPYEWQLILRRYKIMKY 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,737
Number of Sequences: 438
Number of extensions: 5552
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)