Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J03
         (825 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61240.1 68418.m07681 leucine-rich repeat family protein cont...    33   0.30 
At2g07880.1 68415.m01007 hypothetical protein                          31   0.93 
At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    31   0.93 
At5g48385.1 68418.m05980 expressed protein                             29   2.8  
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam...    29   3.7  
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam...    29   3.7  
At5g23880.1 68418.m02805 cleavage and polyadenylation specificit...    28   6.5  
At1g79860.1 68414.m09329 expressed protein contains Pfam profile...    28   8.7  
At1g50430.1 68414.m05652 7-dehydrocholesterol reductase / 7-DHC ...    28   8.7  

>At5g61240.1 68418.m07681 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 380

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 618 PILGKISLGNQKVLIILPQFFLIIRRMSSVTVSHINIYWLGVKRRKRWNR 469
           P  G  SL ++    +    +L    MSS  + H+NIY + + R  RWN+
Sbjct: 137 PNSGSNSLQSELSTYVTEVCYLCHHNMSSFQILHLNIYSVVITRNLRWNK 186


>At2g07880.1 68415.m01007 hypothetical protein
          Length = 173

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 27/101 (26%), Positives = 40/101 (39%)
 Frame = +1

Query: 367 IEHSHHTVDTGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMGNRYRRHAS 546
           +E+ HH     LDQ +  H     L F  P    P   LPP + +PI +  G     H+ 
Sbjct: 63  VEYHHHH---SLDQSLYQHGRVPPLSFTRPITLPPSRVLPPPSTRPITLPHGRVPYHHSL 119

Query: 547 DDQEELRQYNEHFLISEGYFPKNRESSRNKRFRSALLYSLN 669
           D    L         ++   P  R   R + F  +L +SL+
Sbjct: 120 DVFTRLPASESSPFRTQ---PDTRAQGRKEDFSLSLDHSLD 157


>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 220 LWLYQG-DNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDT 396
           L LYQ  ++   +   A+  +   KID  ++D  ++ + +++  E+  +  + + ++ D 
Sbjct: 86  LMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISGSEDQSSPQKRTRYSPDA 145

Query: 397 GLDQPIESHRNTR 435
           G  + +ESH NT+
Sbjct: 146 GDFKGVESHSNTQ 158


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -3

Query: 460 LEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW*HCE-HTFGLDRAARRRFSK 284
           +E T++   L    S    Q+Q    ++  Q      L W   E H  GL+R+ +RRF +
Sbjct: 1   MEDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHE 60

Query: 283 EESDGLQY 260
            E    +Y
Sbjct: 61  LEDQEKEY 68


>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 482

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +1

Query: 211 QEPLWLYQGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTV 390
           Q P     GD    A  TADH IL + I        + +  +VT+  N++ ++ HS    
Sbjct: 275 QAPTVTQNGDGSSTASGTADHSILNADI------TTQVHTLTVTSSSNSQQAVSHSEVAK 328

Query: 391 DTGLDQPIES 420
            T    P+E+
Sbjct: 329 ATEDAAPLEN 338


>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 743

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +1

Query: 211 QEPLWLYQGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTV 390
           Q P     GD    A  TADH IL + I        + +  +VT+  N++ ++ HS    
Sbjct: 536 QAPTVTQNGDGSSTASGTADHSILNADI------TTQVHTLTVTSSSNSQQAVSHSEVAK 589

Query: 391 DTGLDQPIES 420
            T    P+E+
Sbjct: 590 ATEDAAPLEN 599


>At5g23880.1 68418.m02805 cleavage and polyadenylation specificity
           factor identical to cleavage and polyadenylation
           specificity factor [Arabidopsis thaliana]
           SWISS-PROT:Q9LKF9
          Length = 739

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -3

Query: 694 YHXNXSNYDSMNIGVHXEIFCFWNFPYSWENIPRKSESAHYIAAILLDHPTHVVGNGFPY 515
           Y+ N  +Y     G +  I C WN  +    +   S  A  I A+LL HP  +     PY
Sbjct: 14  YNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLLSHPDTLHIGALPY 73


>At1g79860.1 68414.m09329 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 515

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/85 (20%), Positives = 33/85 (38%)
 Frame = +1

Query: 343 NPENNEASIEHSHHTVDTGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMG 522
           N +NN A+  +   +V+TGLD+      +   L  ++P    P+            +   
Sbjct: 23  NNDNNSATRHNKSLSVETGLDEAATGSHDAEPLTIIHPSQGPPLSRSAADEAVLAALAAS 82

Query: 523 NRYRRHASDDQEELRQYNEHFLISE 597
               R    D E++++     L+ E
Sbjct: 83  QARERQLLADMEQMKERFSKLLLGE 107


>At1g50430.1 68414.m05652 7-dehydrocholesterol reductase / 7-DHC
           reductase / sterol delta-7-reductase (ST7R) / dwarf5
           protein (DWF5) identical to SP|Q9LDU6
           7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC
           reductase) (Sterol delta-7-reductase) (Dwarf5 protein)
           {Arabidopsis thaliana}
          Length = 432

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 560 NCGNIMSTF*FPRDIFPRIGKVPETKDF 643
           +CGN++  F +  +++PRIGK  + K F
Sbjct: 168 SCGNLIIDFYWGMELYPRIGKSFDIKVF 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,968,765
Number of Sequences: 28952
Number of extensions: 375745
Number of successful extensions: 1083
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)