Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J02
         (1133 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    29   5.7  
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t...    29   5.7  
At3g59640.1 68416.m06654 glycine-rich protein                          29   5.7  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    28   9.9  
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr...    28   9.9  

>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
            cDNA putative transcription factor (HUA2) GI:4868119;
            contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -3

Query: 915  PSXPXRPXXPLSPPXXXPPXPP 850
            PS P  P  PLSPP   PP PP
Sbjct: 1107 PSQP--PPPPLSPPPSPPPPPP 1126


>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
           carteri f. nagariensis GP|6523547; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 375

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 915 PSXPXRPXXP-LSPPXXXPPXPP 850
           P+ P +P  P LSPP   PP PP
Sbjct: 86  PALPPKPLPPPLSPPQTTPPPPP 108



 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 915 PSXPXRPXXP-LSPPXXXPPXPP 850
           P+ P +P  P LSPP   PP PP
Sbjct: 140 PALPPKPLPPPLSPPQTTPPPPP 162


>At3g59640.1 68416.m06654 glycine-rich protein
          Length = 246

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 848 RGGXGGXXXGGERGXXGRXGXDG 916
           RGG GG   GG  G  G  G DG
Sbjct: 126 RGGGGGGRNGGNNGSGGSSGEDG 148


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 915 PSXPXRPXXPLSPPXXXPPXPP 850
           PS P  P  P  PP   PP PP
Sbjct: 377 PSPPPPPPPPPPPPPPPPPPPP 398


>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
           protein kinase family protein contains leucine
           rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat transmembrane protein kinase 2 [Zea mays]
           gi|3360291|gb|AAC27895
          Length = 768

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 915 PSXPXRPXXPLSPPXXXPPXPPL 847
           P  P  P  PL P    PP PPL
Sbjct: 277 PPAPFAPFAPLQPQQHPPPSPPL 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,605,279
Number of Sequences: 28952
Number of extensions: 37274
Number of successful extensions: 495
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2860466320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)