Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I24
         (1096 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.68 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   6.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.68
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 349 PPPPXXXSPPPPPPAXNXXXGASL 420
           PP P   +PPPPPP+ +    A L
Sbjct: 338 PPKP---APPPPPPSSSGPDSAKL 358



 Score = 23.4 bits (48), Expect = 3.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 979  SXXPPXXXPPPPP 1017
            S  PP   PPPPP
Sbjct: 335  SDTPPKPAPPPPP 347



 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 340 GXXPPPPXXXSPPPPP 387
           G    PP    PPPPP
Sbjct: 333 GDSDTPPKPAPPPPPP 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -3

Query: 698 GAXRAGGXGXGGRGXXXXXXGGXGGLGGG 612
           G+  AGG   G  G         GG GGG
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,144
Number of Sequences: 438
Number of extensions: 5956
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36752805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)