Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I23
         (922 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.5  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   4.4  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -3

Query: 401 PRGHPFRAVQSREQGHQDHH-RGPAPRHSEKH 309
           P G P    QS    H  HH +   P+H + H
Sbjct: 151 PTGSPPLTTQSMNNHHMGHHMQEQHPQHHQPH 182


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -3

Query: 401 PRGHPFRAVQSREQGHQDHH-RGPAPRHSEKH 309
           P G P    QS    H  HH +   P+H + H
Sbjct: 153 PTGSPPLTTQSMNNHHMGHHMQEQHPQHHQPH 184


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 31  ILKIWCATQFPLRPNGLRRNFSPKL 105
           ++K W   +  +   G+RRNF  KL
Sbjct: 421 LMKAWLKIELLVGNLGMRRNFRKKL 445


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,512
Number of Sequences: 336
Number of extensions: 1881
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25754817
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)