Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I23
         (922 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.005
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   4.0  
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     29   5.3  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   5.3  
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 28   9.2  
SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 23/63 (36%), Positives = 28/63 (44%)
 Frame = -1

Query: 379 RCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 200
           R R+ SR  R    +R P   R +R P P   S   R RS +PR R+  SR    RR   
Sbjct: 223 RSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRS 282

Query: 199 HFH 191
             H
Sbjct: 283 RSH 285


>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = -1

Query: 364 SRDIRTTTEARRPGTARNTRRPKPTELSACCR----ERSETPRHRNKPSRPVWSRRSPHH 197
           +RD R T   R P  ++  R P+P++     R    +R   P  + +  RP   +R P H
Sbjct: 191 NRDTRDTINNRHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRH 250


>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +1

Query: 166 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLGAGPL 342
           ++ +S+Y      ++++ + ++++Y  +      P S  +A   SD   FSLC+  GPL
Sbjct: 137 NTRLSEYLESRDCEAMDVR-LQRLYEHELVMYRLPESSATATPLSDLFDFSLCMCYGPL 194


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 352 RTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRN-KPSR 227
           R+ T  R+  T+ N R P P   S   R  S +PR R+  PSR
Sbjct: 543 RSYTSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -1

Query: 370 AVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 200
           A+   +  T    RP + R  R P     S     R +T      PSRP  + R PH
Sbjct: 4   ALHNTLTRTRVPSRPCSLRTVRHPHTGTKSTMAYARDDTLTRTRVPSRPSRTVRHPH 60


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 397  GVTXSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETP 251
            G + S RC+  ++ ++     ++PG+A    +PK  + S   R+RS +P
Sbjct: 1888 GFSQSRRCKTTAKALKKAKGKQKPGSATKKTKPK-QDSSKKKRKRSPSP 1935


>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = -3

Query: 395 GHPFRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 243
           G P R       G  D H GP  RH   H        +RL P   RD   P
Sbjct: 132 GPPDRHTPPDRNGPPDRH-GPPDRHGMDHGRGRGRGRDRLSPPPHRDRGRP 181


>SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 364 SRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSP 203
           +RD R T   R P  ++  R P+P++     ++R   P  + +  RP   +R P
Sbjct: 151 NRDTRDTINNRHPRPSQQQRYPRPSQ-----QQRYPRPSQQQRHPRPSQQQRHP 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,563,508
Number of Sequences: 59808
Number of extensions: 244943
Number of successful extensions: 821
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)