Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I23
         (922 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12450.1 68417.m01970 expressed protein                             29   3.3  
At1g70590.1 68414.m08131 F-box family protein contains Pfam PF00...    29   3.3  
At5g53440.1 68418.m06641 expressed protein                             29   5.7  

>At4g12450.1 68417.m01970 expressed protein
          Length = 277

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 376 CRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRS 206
           CR   RD+  T    +PGT +   +P P+    C   R E   + + P+R   S R+
Sbjct: 36  CRKNVRDVVNT----QPGTVKKNPKPDPSLRRLCSSRRPELDSNSHHPTRRSVSARA 88


>At1g70590.1 68414.m08131 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 351

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
 Frame = -1

Query: 148 LTSSSWRDVIKPLK-----ITWGKNYGANR 74
           L   SWRD +KPL+     I WGK Y   R
Sbjct: 90  LVCKSWRDALKPLRESMLLIRWGKKYKHGR 119


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 398 RGHPFRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAE 282
           RG   R+++  E GH+++ R  +    E+H   E  +AE
Sbjct: 545 RGGARRSIEVEETGHRNNARDYSATEEERHLVDETSQAE 583


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,246,450
Number of Sequences: 28952
Number of extensions: 164148
Number of successful extensions: 596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)