Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I20
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    54   1e-07
SB_49246| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19)                   29   3.5  
SB_49827| Best HMM Match : zf-C2H2 (HMM E-Value=7e-07)                 29   3.5  
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)                 29   4.6  
SB_58188| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_21452| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = +2

Query: 464 KTRLELSDTQGSWVASLLCLGAVFGAVPSGPDXEYFGRKKTXXXXXXXXXVSWILVASSP 643
           K  ++L+ +QGSW +SL+ LGA+ GA   G   EYFGRK T         V W+L+A + 
Sbjct: 77  KESVKLTVSQGSWFSSLVTLGAILGAPLGGWTLEYFGRKGTIMACAVPFEVGWMLIAYAN 136

Query: 644 NVYG-FICRXICG 679
           + Y  +I R I G
Sbjct: 137 SHYMLYIGRFITG 149


>SB_49246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 137 FGTDKWKNKVHRLWKPKHCRGMWNSGTVKMATPKSSSAWR 256
           F T  WKNK   +W+ K    MW + +  M   KS+  WR
Sbjct: 11  FTTPMWKNKSTPMWRNK-STPMWGNKSTPMWGNKSTPMWR 49


>SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19)
          Length = 351

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 395 YGKDYTTPIPDWAEQNSTYDENFKTRLELSDTQGSW 502
           + + YT  + D  E++ T  ++F   LE+ DT GS+
Sbjct: 132 FSEQYTPTVGDLYEKSVTLSKDFNAFLEIMDTAGSY 167


>SB_49827| Best HMM Match : zf-C2H2 (HMM E-Value=7e-07)
          Length = 279

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 157 EQSSSTLEAEALSRDVEQRDSQNGHPKVLVRMETIPDIKRDTSGITTQYVGTGI 318
           E+ SS +E++ LS    ++D  NGH +   +M     +KR +  +      +G+
Sbjct: 50  EKPSSEIESDMLSTQAIRKDFLNGHARTDDKMSASDSLKRSSEHLPNLACQSGV 103


>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
          Length = 456

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 467 TRLELSDTQGSWVASLLCLGAVFGAVPSGPDXEYFGRKKTXXXXXXXXXVSWILVASSPN 646
           T L L+  + +W  SLL +GA+ G    G   +  GRK             W+L+    N
Sbjct: 74  TDLYLNADEITWFGSLLNIGAMLGGPIQGFLIDLIGRKFALILTSVPFCSGWLLIGFGKN 133


>SB_58188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -1

Query: 197 LDSASASKVDELCSSIYRSQNTSEAVLILM 108
           +D A+   VDELCS++  S+N  + VL++M
Sbjct: 168 VDDANRGMVDELCSAL-GSRNVGDGVLMIM 196


>SB_21452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  PHYRESLRFDLSRATQSSCNGFRVDCNLFISL 112
           PHY+ +L   LS    SSC G R DC+   SL
Sbjct: 178 PHYKPALAASLSTRALSSCPGSR-DCSCCSSL 208


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 135  VLGPINGRTKFIDFGSRSTVEGCGTAGQSKW 227
            VL P NG   + D+GS+  +E     G S+W
Sbjct: 1463 VLDPPNGHMFWTDWGSKPKIEKSNMDGTSRW 1493


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,299,510
Number of Sequences: 59808
Number of extensions: 636445
Number of successful extensions: 1838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1837
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)