Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I20
         (830 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132743-1|AAI32744.1|  473|Homo sapiens potassium channel tetra...    31   5.1  
AK123347-1|BAC85588.1|  473|Homo sapiens protein ( Homo sapiens ...    31   5.1  

>BC132743-1|AAI32744.1|  473|Homo sapiens potassium channel
           tetramerisation domain containing 8 protein.
          Length = 473

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = +2

Query: 422 PDWAEQNSTYDENFKTRLELSDTQGSWVASLLCLGAVFGAVPSGP 556
           P   +QNS  DE  ++ LE + +QGS  A LL  GA   AVPSGP
Sbjct: 148 PKVTKQNSLNDEGCQSDLEDNVSQGSSDA-LLLRGAA-AAVPSGP 190


>AK123347-1|BAC85588.1|  473|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41353 fis, clone BRAWH2014662. ).
          Length = 473

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = +2

Query: 422 PDWAEQNSTYDENFKTRLELSDTQGSWVASLLCLGAVFGAVPSGP 556
           P   +QNS  DE  ++ LE + +QGS  A LL  GA   AVPSGP
Sbjct: 148 PKVTKQNSLNDEGCQSDLEDNVSQGSSDA-LLLRGAA-AAVPSGP 190


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,788,192
Number of Sequences: 237096
Number of extensions: 3025487
Number of successful extensions: 6389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6387
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)