Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_I19
(838 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25664| Best HMM Match : DRMBL (HMM E-Value=4.3) 32 0.50
SB_4543| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.66
SB_41762| Best HMM Match : Tom22 (HMM E-Value=5.3) 30 2.0
SB_27420| Best HMM Match : PHB_acc (HMM E-Value=6.6) 30 2.0
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 30 2.7
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 29 3.5
SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.5
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 29 3.5
SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5) 29 3.5
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.5
SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8) 29 3.5
SB_32624| Best HMM Match : rve (HMM E-Value=0.00042) 29 3.5
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) 29 3.5
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) 29 3.5
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 29 3.5
>SB_25664| Best HMM Match : DRMBL (HMM E-Value=4.3)
Length = 353
Score = 32.3 bits (70), Expect = 0.50
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +2
Query: 89 YKNEILHDFPSS--LCWLWPTLKTPXKVVENA----DSVVINDPESILC 217
Y + + F SS C+L PT+ P +V +N+ D++ +N PE + C
Sbjct: 245 YSDSAIETFISSGKCCYLIPTIDKPTRVHKNSATLIDNIFVNSPEQVTC 293
>SB_4543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Frame = +2
Query: 101 ILHDFP---SSLCWLWPTLKTPXKVVENA----DSVVINDPESILC 217
+LH F S C+L PT+ P +V +N+ D++ +N PE + C
Sbjct: 53 LLHPFVVRNSQSCYLIPTIDKPTRVHKNSATLIDNIFVNSPEQVTC 98
>SB_41762| Best HMM Match : Tom22 (HMM E-Value=5.3)
Length = 568
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 140 PTLKTPXKVVENADSVVINDPESILCPAYCR-KRLRTY*QPPXTSLILPKTTTLMETATN 316
PT T +++ D + D + PA LRT +PP S L+ +AT+
Sbjct: 204 PTSSTTPEMMTLPDDIATIDASNSPHPANAALASLRTR-EPPEESCSYGIDKELVSSATS 262
Query: 317 LSTTVHITWTLPKADLTSSLPLSLVLAV 400
T+ +TW K + TS L + A+
Sbjct: 263 TLNTMAVTWETVKLETTSDPNLHSLTAI 290
>SB_27420| Best HMM Match : PHB_acc (HMM E-Value=6.6)
Length = 291
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +2
Query: 128 CWLWPTLKTPXKVVENA----DSVVINDPESILC 217
C+L PT+ P +V +N+ D++ +N PE + C
Sbjct: 2 CYLIPTIDKPTRVHKNSATLIDNIFVNSPEQVTC 35
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/60 (38%), Positives = 27/60 (45%)
Frame = +2
Query: 200 PESILCPAYCRKRLRTY*QPPXTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLP 379
PE+ P K T PP T+ LPKTT + ET TT T + DLT LP
Sbjct: 222 PETTAAPETIAKPETT--APPETTA-LPKTTAVPETTAAPETTAKPETTDLRVDLTIFLP 278
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 140 PTLKTPXKVVENADSVVINDPESILCPAYCR-KRLRTY*QPPXTSLILPKTTTLMETATN 316
PT T +++ D + D + PA LRT +PP S L+ +AT+
Sbjct: 691 PTGSTTPEMMTLPDDIATIDASNSPHPANAALASLRTR-EPPEESCSYEIDKELVSSATS 749
Query: 317 LSTTVHITWTLPKADLTSSLPLSLVLAV 400
T+ +TW K + TS L + A+
Sbjct: 750 TLNTMAVTWETVKLETTSDPNLHSLTAI 777
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 140 PTLKTPXKVVENADSVVINDPESILCPAYCR-KRLRTY*QPPXTSLILPKTTTLMETATN 316
PT T +++ D + D + PA LRT +PP S L+ +AT+
Sbjct: 757 PTGSTTPEMMTLPDDIATIDASNSPHPANAALASLRTR-EPPEESCSYGIDKELVSSATS 815
Query: 317 LSTTVHITWTLPKADLTSSLPLSLVLAV 400
T+ +TW K + TS L + A+
Sbjct: 816 TLNTMAVTWETVKLETTSDPNLHSLTAI 843
>SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1017
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 140 PTLKTPXKVVENADSVVINDPESILCPAYCR-KRLRTY*QPPXTSLILPKTTTLMETATN 316
PT T +++ D + D + PA LRT +PP S L+ +AT+
Sbjct: 444 PTGSTTPEMMTLPDDIATIDASNSPHPANAALASLRTR-EPPEESCSYGIDKELVSSATS 502
Query: 317 LSTTVHITWTLPKADLTSSLPLSLVLAV 400
T+ +TW K + TS L + A+
Sbjct: 503 TLNTMAVTWETVKLETTSDPNLHSLTAI 530
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 260 PXTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSS 373
P T+L PKTTT +ET TTV + T P + TS+
Sbjct: 232 PATTLA-PKTTTALETTVEAKTTV-VPETTPALETTSA 267
>SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 398
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 140 PTLKTPXKVVENADSVVINDPESILCPAYCR-KRLRTY*QPPXTSLILPKTTTLMETATN 316
PT T +++ D + D + PA LRT +PP S L+ +AT+
Sbjct: 184 PTGSTTPEMMTLPDDIATIDASNSPHPANAALASLRTR-EPPEESCSYGIDKELVSSATS 242
Query: 317 LSTTVHITWTLPKADLTSSLPLSLVLAV 400
T+ +TW K + TS L + A+
Sbjct: 243 TLNTMAVTWETVKLETTSDPNLHSLTAI 270
>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1013
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 140 PTLKTPXKVVENADSVVINDPESILCPAYCR-KRLRTY*QPPXTSLILPKTTTLMETATN 316
PT T +++ D + D + PA LRT +PP S L+ +AT+
Sbjct: 105 PTGSTTPEMMTLPDDIATIDASNSPHPANAALASLRTR-EPPEESCSYGIDKELVSSATS 163
Query: 317 LSTTVHITWTLPKADLTSSLPLSLVLAV 400
T+ +TW K + TS L + A+
Sbjct: 164 TLNTMAVTWETVKLETTSDPNLHSLTAI 191
>SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 140 PTLKTPXKVVENADSVVINDPESILCPAYCR-KRLRTY*QPPXTSLILPKTTTLMETATN 316
PT T +++ D + D + PA LRT +PP S L+ +AT+
Sbjct: 221 PTGSTTPEMMTLPDDIATIDASNSPHPANAALASLRTR-EPPEESCSYGIDKELVSSATS 279
Query: 317 LSTTVHITWTLPKADLTSSLPLSLVLAV 400
T+ +TW K + TS L + A+
Sbjct: 280 TLNTMAVTWETVKLETTSDPNLHSLTAI 307
>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
Length = 420
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 140 PTLKTPXKVVENADSVVINDPESILCPAYCR-KRLRTY*QPPXTSLILPKTTTLMETATN 316
PT T +++ D + D + PA LRT +PP S L+ +AT+
Sbjct: 284 PTGSTTPEMMTLPDDIATIDASNSPHPANAALASLRTR-EPPEESCSYGIDKELVSSATS 342
Query: 317 LSTTVHITWTLPKADLTSSLPLSLVLAV 400
T+ +TW K + TS L + A+
Sbjct: 343 TLNTMAVTWETVKLETTSDPNLHSLTAI 370
>SB_32624| Best HMM Match : rve (HMM E-Value=0.00042)
Length = 415
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 140 PTLKTPXKVVENADSVVINDPESILCPAYCR-KRLRTY*QPPXTSLILPKTTTLMETATN 316
PT T +++ D + D + PA LRT +PP S L+ +AT+
Sbjct: 105 PTGSTTPEMMTLPDDIATIDASNSPHPANAALASLRTR-EPPEESCSYGIDKELVSSATS 163
Query: 317 LSTTVHITWTLPKADLTSSLPLSLVLAV 400
T+ +TW K + TS L + A+
Sbjct: 164 TLNTMAVTWETVKLETTSDPNLHSLTAI 191
>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
Length = 838
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 140 PTLKTPXKVVENADSVVINDPESILCPAYCR-KRLRTY*QPPXTSLILPKTTTLMETATN 316
PT T +++ D + D + PA LRT +PP S L+ +AT+
Sbjct: 298 PTGSTTPEMMTLPDDIATIDASNSPHPANAALASLRTR-EPPEESCSYGIDKELVSSATS 356
Query: 317 LSTTVHITWTLPKADLTSSLPLSLVLAV 400
T+ +TW K + TS L + A+
Sbjct: 357 TLNTMAVTWETVKLETTSDPNLHSLTAI 384
>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
Length = 1502
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 140 PTLKTPXKVVENADSVVINDPESILCPAYCR-KRLRTY*QPPXTSLILPKTTTLMETATN 316
PT T +++ D + D + PA LRT +PP S L+ +AT+
Sbjct: 1011 PTGSTTPEMMTLPDDIATIDASNSPHPANAALASLRTR-EPPEESCSYGIDKELVSSATS 1069
Query: 317 LSTTVHITWTLPKADLTSSLPLSLVLAV 400
T+ +TW K + TS L + A+
Sbjct: 1070 TLNTMAVTWETVKLETTSDPNLHSLTAI 1097
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 260 PXTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSS 373
P T+L PKTTT +ET TTV + T P + TS+
Sbjct: 2294 PATTLA-PKTTTALETTVEAKTTV-VPETTPALETTSA 2329
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 260 PXTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSS 373
P T+L PKTTT +ET TTV + T P + TS+
Sbjct: 779 PATTLA-PKTTTALETTVAAKTTV-VPETTPALETTSA 814
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,836,608
Number of Sequences: 59808
Number of extensions: 413840
Number of successful extensions: 1082
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -