Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I19
         (838 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068505-1|AAH68505.1|  644|Homo sapiens zinc finger protein 746...    31   3.9  
AK128244-1|BAC87351.1|  459|Homo sapiens protein ( Homo sapiens ...    31   3.9  
AK055975-1|BAB71061.1|  242|Homo sapiens protein ( Homo sapiens ...    31   3.9  
AY048121-1|AAK85703.1|  659|Homo sapiens RAS guanyl releasing pr...    30   9.0  
AY048119-1|AAK85701.1|  673|Homo sapiens RAS guanyl releasing pr...    30   9.0  

>BC068505-1|AAH68505.1|  644|Homo sapiens zinc finger protein 746
           protein.
          Length = 644

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 295 PNGNGYEPIDNGAYYVDPPQG-RPYFKPTPFPGARGG 402
           P G  Y   DNG   +DP Q  RP+ +P  +PG   G
Sbjct: 397 PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 433


>AK128244-1|BAC87351.1|  459|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46378 fis, clone TESTI4052775. ).
          Length = 459

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 295 PNGNGYEPIDNGAYYVDPPQG-RPYFKPTPFPGARGG 402
           P G  Y   DNG   +DP Q  RP+ +P  +PG   G
Sbjct: 212 PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 248


>AK055975-1|BAB71061.1|  242|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31413 fis, clone NT2NE2000259, moderately
           similar to OOCYTE ZINC FINGER PROTEIN XLCOF6.1. ).
          Length = 242

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 295 PNGNGYEPIDNGAYYVDPPQG-RPYFKPTPFPGARGG 402
           P G  Y   DNG   +DP Q  RP+ +P  +PG   G
Sbjct: 43  PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 79


>AY048121-1|AAK85703.1|  659|Homo sapiens RAS guanyl releasing
           protein 4 variant 2 protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 314 NLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEYLRKLI 430
           N+   +H +W LP ADL + L  S   A G  + LR+L+
Sbjct: 83  NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRLL 120


>AY048119-1|AAK85701.1|  673|Homo sapiens RAS guanyl releasing
           protein 4 protein.
          Length = 673

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 314 NLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEYLRKLI 430
           N+   +H +W LP ADL + L  S   A G  + LR+L+
Sbjct: 83  NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRLL 120


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,487,685
Number of Sequences: 237096
Number of extensions: 2276703
Number of successful extensions: 10776
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10773
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)