Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I19
         (838 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55620.2 68414.m06367 voltage-gated chloride channel family p...    30   1.7  
At1g55620.1 68414.m06366 voltage-gated chloride channel family p...    30   1.7  
At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containi...    29   3.8  
At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containi...    29   3.8  
At5g44780.1 68418.m05488 expressed protein low similarity to SP|...    28   6.7  
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    28   6.7  
At1g72110.1 68414.m08335 expressed protein                             28   6.7  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    28   8.8  

>At1g55620.2 68414.m06367 voltage-gated chloride channel family
           protein contains Pfam profiles PF00654: Voltage gated
           chloride channel, PF00571: CBS domain
          Length = 781

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 239 LRTY*QPPXTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAVG 403
           LR    PP T+ ++   + +  T +N        +T+P  DL S+  L L L +G
Sbjct: 306 LRAENSPPFTTAMIILASVISSTVSNALLGTQSAFTVPSYDLKSAAELPLYLILG 360


>At1g55620.1 68414.m06366 voltage-gated chloride channel family
           protein contains Pfam profiles PF00654: Voltage gated
           chloride channel, PF00571: CBS domain
          Length = 585

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 239 LRTY*QPPXTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAVG 403
           LR    PP T+ ++   + +  T +N        +T+P  DL S+  L L L +G
Sbjct: 110 LRAENSPPFTTAMIILASVISSTVSNALLGTQSAFTVPSYDLKSAAELPLYLILG 164


>At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 766

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 234 FLQ*AGQRMDSGSLITTESA-FSTTLXGVLSVGHSQQSED 118
           F Q  G+R D G++I  +S  F+T + G+  VG  +++E+
Sbjct: 352 FEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEE 391


>At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 727

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 234 FLQ*AGQRMDSGSLITTESA-FSTTLXGVLSVGHSQQSED 118
           F Q  G+R D G++I  +S  F+T + G+  VG  +++E+
Sbjct: 352 FEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEE 391


>At5g44780.1 68418.m05488 expressed protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 723

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 286 DYNP-NGNGYEPIDNGAYYVDPPQGR 360
           +Y+P NG  Y P   G +Y  PPQG+
Sbjct: 530 NYSPQNGGHYGPAQFGQWYPGPPQGQ 555


>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
           (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
           (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
           {Arabidopsis thaliana}; contains Pfam profiles: PF00614
           phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 286 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 387
           DY P+   Y+P  N   Y  PP    Y +P  +P
Sbjct: 101 DYQPSPYPYQPQGNFGAYGPPPPHYSYQEPAQYP 134


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 475 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 380
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 277 PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 387
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,584,004
Number of Sequences: 28952
Number of extensions: 307621
Number of successful extensions: 592
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)