Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I18
         (867 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    50   2e-06
At1g49330.1 68414.m05529 hydroxyproline-rich glycoprotein family...    29   3.0  
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    28   7.0  

>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = +3

Query: 219 RCQKCLEFGHWSYECKGKRKILVRPSRT-RIMHKNLKAKEEGQCSNGS 359
           +CQKC + GHW+YECK +R  + RPSRT ++ +  L+ K      +GS
Sbjct: 99  QCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRTKPSVDDLDGS 146


>At1g49330.1 68414.m05529 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 331

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 646 WYNSYFQQTXTSPTLYFSYFPTKLILP 726
           W ++YFQQT   P L   +FP   + P
Sbjct: 107 WMSNYFQQTPNPPQLVTHFFPPSGLAP 133


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 222 CQKCLEFGHWSYECKGK 272
           C KC + GHWS +C G+
Sbjct: 306 CYKCGKQGHWSRDCTGQ 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,424,652
Number of Sequences: 28952
Number of extensions: 238078
Number of successful extensions: 596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)