Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I17
         (913 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   4e-16
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.42 
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            30   2.3  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   3.0  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 82.6 bits (195), Expect = 4e-16
 Identities = 39/51 (76%), Positives = 44/51 (86%), Gaps = 2/51 (3%)
 Frame = +2

Query: 236 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSK 382
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSK
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSK 56



 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 37/42 (88%), Positives = 41/42 (97%)
 Frame = +1

Query: 391 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 516
           DR++MRIHKR+IDLHSPSEIVKQITSI+IEPGV VEVTIADA
Sbjct: 59  DRYEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 74   FLRFSAEQFLIEKLFISAGIQQATWQPLVVSGKDIEKPQAEVSPI-HRIRITLTSRNVRS 250
            FL  + E+  ++K  + AG+   T+Q LVV    +E+  A + P+ HR R++  S  V S
Sbjct: 845  FLTANLEEETLQKYSLVAGVLTYTFQVLVVVALTLERLLAILCPVFHRNRMSFESAVVSS 904

Query: 251  L 253
            L
Sbjct: 905  L 905


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 205 YSPHQDHSYFSQCALTR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 354
           Y P   +SY + CA T+   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 235 SQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 354
           S C     GLC P  +   ++ +  GPSP +  DP+   P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 170 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 271
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,489,224
Number of Sequences: 59808
Number of extensions: 376024
Number of successful extensions: 898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)