Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I17
         (913 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20 pro...   113   1e-24
BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20 p...   113   1e-24
BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20 p...   113   1e-24
AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20 p...   113   1e-24
AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20 p...    68   4e-11

>L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  113 bits (271), Expect = 1e-24
 Identities = 56/72 (77%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
 Frame = +2

Query: 170 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 346
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 347 TTRKTPCGEGSK 382
           TTRKTPCGEGSK
Sbjct: 64  TTRKTPCGEGSK 75



 Score = 82.2 bits (194), Expect = 2e-15
 Identities = 39/42 (92%), Positives = 41/42 (97%)
 Frame = +1

Query: 391 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 516
           DRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV VEVTIADA
Sbjct: 78  DRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  113 bits (271), Expect = 1e-24
 Identities = 56/72 (77%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
 Frame = +2

Query: 170 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 346
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 347 TTRKTPCGEGSK 382
           TTRKTPCGEGSK
Sbjct: 64  TTRKTPCGEGSK 75



 Score = 82.2 bits (194), Expect = 2e-15
 Identities = 39/42 (92%), Positives = 41/42 (97%)
 Frame = +1

Query: 391 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 516
           DRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV VEVTIADA
Sbjct: 78  DRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  113 bits (271), Expect = 1e-24
 Identities = 56/72 (77%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
 Frame = +2

Query: 170 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 346
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 347 TTRKTPCGEGSK 382
           TTRKTPCGEGSK
Sbjct: 64  TTRKTPCGEGSK 75



 Score = 82.2 bits (194), Expect = 2e-15
 Identities = 39/42 (92%), Positives = 41/42 (97%)
 Frame = +1

Query: 391 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 516
           DRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV VEVTIADA
Sbjct: 78  DRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  113 bits (271), Expect = 1e-24
 Identities = 56/72 (77%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
 Frame = +2

Query: 170 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 346
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 347 TTRKTPCGEGSK 382
           TTRKTPCGEGSK
Sbjct: 64  TTRKTPCGEGSK 75



 Score = 82.2 bits (194), Expect = 2e-15
 Identities = 39/42 (92%), Positives = 41/42 (97%)
 Frame = +1

Query: 391 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 516
           DRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV VEVTIADA
Sbjct: 78  DRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20
           protein.
          Length = 60

 Score = 68.1 bits (159), Expect = 4e-11
 Identities = 31/33 (93%), Positives = 33/33 (100%)
 Frame = +1

Query: 391 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 489
           DRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 28  DRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60



 Score = 55.6 bits (128), Expect = 2e-07
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +2

Query: 308 KGPVRMPTKILRITTRKTPCGEGSK 382
           KGPVRMPTK LRITTRKTPCGEGSK
Sbjct: 1   KGPVRMPTKTLRITTRKTPCGEGSK 25


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,961,024
Number of Sequences: 237096
Number of extensions: 1883772
Number of successful extensions: 3478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3477
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)