Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I17
         (913 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo...   104   7e-23
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ...   104   7e-23
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ...   103   2e-22
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ...   103   2e-22
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,...    38   0.012

>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
           ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
          Length = 124

 Score =  104 bits (250), Expect = 7e-23
 Identities = 47/78 (60%), Positives = 63/78 (80%)
 Frame = +2

Query: 146 WQPLVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRM 325
           +QP+      +E+P   +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRM
Sbjct: 5   YQPMKPGKAGLEEP---LEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRM 61

Query: 326 PTKILRITTRKTPCGEGS 379
           PTK+L+ITTRK PCGEG+
Sbjct: 62  PTKVLKITTRKAPCGEGT 79



 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = +1

Query: 391 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 516
           DRF++R+HKRVIDL S  ++VKQITSI IEPGV VEVTIAD+
Sbjct: 83  DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
           ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
          Length = 124

 Score =  104 bits (250), Expect = 7e-23
 Identities = 47/78 (60%), Positives = 63/78 (80%)
 Frame = +2

Query: 146 WQPLVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRM 325
           +QP+      +E+P   +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRM
Sbjct: 5   YQPMKPGKAGLEEP---LEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRM 61

Query: 326 PTKILRITTRKTPCGEGS 379
           PTK+L+ITTRK PCGEG+
Sbjct: 62  PTKVLKITTRKAPCGEGT 79



 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = +1

Query: 391 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 516
           DRF++R+HKRVIDL S  ++VKQITSI IEPGV VEVTIAD+
Sbjct: 83  DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  103 bits (247), Expect = 2e-22
 Identities = 44/64 (68%), Positives = 57/64 (89%)
 Frame = +2

Query: 188 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 367
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 368 GEGS 379
           GEG+
Sbjct: 74  GEGT 77



 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = +1

Query: 391 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 516
           DRF++R+HKRVIDL S  ++VKQITSI IEPGV VEVTIAD+
Sbjct: 81  DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  103 bits (247), Expect = 2e-22
 Identities = 44/64 (68%), Positives = 57/64 (89%)
 Frame = +2

Query: 188 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 367
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 368 GEGS 379
           GEG+
Sbjct: 74  GEGT 77



 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = +1

Query: 391 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 516
           DRF++R+HKRVIDL S  ++VKQITSI IEPGV VEVTIAD+
Sbjct: 81  DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
           putative similar to 30S ribosomal protein S10 GB:P02364
           [Escherichia coli] (est matches suggest the N-terminal
           extension)
          Length = 191

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = +2

Query: 158 VVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKI 337
           V S   I     +++P  +IRI L S  V  +E  C  +++ A+    +  GPV +PTK 
Sbjct: 76  VPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKK 135

Query: 338 LRITTRKTP 364
                 K+P
Sbjct: 136 RIYCVLKSP 144



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 397 FQMRIHKRVID-LHSPSEIVKQITSINIEPGVXVEVTI 507
           F++R H+R+ID L+  ++ +  +  +++  GV VEV +
Sbjct: 154 FEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,834,821
Number of Sequences: 28952
Number of extensions: 250025
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)