Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I16
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.24 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   8.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   8.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   8.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   8.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect(2) = 0.24
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 836 PXXPPPPPPP 865
           P  P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 845 PPPPPPPXPP 874
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 847 PPPPXPPPXP 876
           PP P PPP P
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 836 PXXPPPPPPP 865
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.6 bits (46), Expect(2) = 0.24
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 845 PPPPPPPXPP 874
           P P PPP PP
Sbjct: 339 PKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 845  PPPPPPP 865
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 845  PPPPPPP 865
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 847  PPPPXPPP 870
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 851  PPPPPXPP 874
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 830  NXPXXPPPPPPPXPP 874
            N P    P PPP PP
Sbjct: 1850 NIPVSGSPEPPPPPP 1864


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 325 DRGKLTGQAYGTRVLGPAGDSTNYGG 402
           D+  +TG AYG   + P   S  + G
Sbjct: 66  DKNGMTGDAYGGLNIRPGQPSRQHAG 91


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 144 FCVNTHQSCSEDIKQICIHFELYQVSLLKTE 52
           + VNT Q  + D +Q  IH+E  Q ++L T+
Sbjct: 276 YYVNTEQFRTSDYQQNDIHYEGVQ-NILDTQ 305


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 144 FCVNTHQSCSEDIKQICIHFELYQVSLLKTE 52
           + VNT Q  + D +Q  IH+E  Q ++L T+
Sbjct: 276 YYVNTEQFRTSDYQQNDIHYEGVQ-NILDTQ 305


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 144 FCVNTHQSCSEDIKQICIHFELYQVSLLKTE 52
           + VNT Q  + D +Q  IH+E  Q ++L T+
Sbjct: 276 YYVNTEQFRTSDYQQNDIHYEGVQ-NILDTQ 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,876
Number of Sequences: 438
Number of extensions: 6014
Number of successful extensions: 29
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)