Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I14
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  33   0.22 
SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)                     29   4.8  
SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)                   29   4.8  
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)                        29   4.8  
SB_2197| Best HMM Match : Uso1_p115_C (HMM E-Value=7)                  29   6.3  
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        28   8.3  

>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = +2

Query: 80  SSALSLSTVHHGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGSSIRL*NNSLTRS 259
           S + S S  H   + RS  R     P+   + RRSR  Q  R+P +  S R  +     S
Sbjct: 214 SRSRSRSRSHRKSRKRSESRSRSRSPKKSRSARRSRSPQKSRSPQRSRSPRS-SKRYRSS 272

Query: 260 PSQRTHRTSAR 292
            S R HR+ +R
Sbjct: 273 RSHRKHRSHSR 283


>SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)
          Length = 504

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +3

Query: 462 EKNATALREKLQAAVQNTVQESQKLAKKVSSNVXETNEXLAPKIKAXYDXFAKNTQEVIQ 641
           E+    L EKL     NT    Q  A    +     N  L PK     D F +N +E+ +
Sbjct: 89  ERVTKELEEKLDTLAFNTEDIEQDWALFKDTIQSTCNNFLGPKTHCHQDWFDENNEEINR 148

Query: 642 KIQE 653
            I E
Sbjct: 149 LIDE 152


>SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)
          Length = 906

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +3

Query: 462 EKNATALREKLQAAVQNTVQESQKLAKKVSSNVXETNEXLAPKIKAXYDXFAKNTQEVIQ 641
           E+    L EKL     NT    Q  A    +     N  L PK     D F +N +E+ +
Sbjct: 189 ERVTKELEEKLDTLAFNTEDIEQDWALFKDTIQSTCNNILGPKTHCHQDWFDENNEEINR 248

Query: 642 KIQE 653
            I E
Sbjct: 249 LIDE 252


>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 2590

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 462 EKNATALREKLQAAVQNTVQESQKLAKKVSSNVXETNEXLAPKIKAXYDXFAKNTQ 629
           EKN   L E   +A+QNT+Q          + + E     A KI+A      K T+
Sbjct: 272 EKNGIFLSEDSYSAMQNTIQSQTSRITHFETRLPEMEADFAAKIEAMEAELQKVTE 327


>SB_2197| Best HMM Match : Uso1_p115_C (HMM E-Value=7)
          Length = 272

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = -3

Query: 236 KVLWNXLGVVFDVLEEVGSVASHHRSLGQSDAGEENYELGGHDVLSRD 93
           K++ + +  +FD  +E+ + ++   +  ++ + E   E+GG + L RD
Sbjct: 115 KIIADQVRTIFDETKEINASSNKPTATTENTSNESEQEVGGSNALPRD 162


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
 Frame = +3

Query: 459 VEKNATALREKLQAAVQNTVQESQKLAKKV--------SSNVXETNEXLAPKIKAXYDXF 614
           VEK A  L+EK Q  +   V + ++  +K          S + ETN  L  K ++     
Sbjct: 561 VEKKAKELKEKYQGELNEKVNKVERTLRKQYEEDIVKGRSELEETNRTLKEKYESEVSEI 620

Query: 615 AKNTQEVIQKIQEAANA 665
               ++V Q+ QE   A
Sbjct: 621 MLQMEQVQQRNQEVFEA 637


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,701,973
Number of Sequences: 59808
Number of extensions: 285565
Number of successful extensions: 754
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)