Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I14
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48160.1 68415.m06031 PWWP domain-containing protein                29   3.9  
At2g43040.1 68415.m05341 calmodulin-binding protein similar to p...    29   5.2  
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (...    28   9.0  
At2g01220.2 68415.m00035 expressed protein                             28   9.0  
At2g01220.1 68415.m00034 expressed protein                             28   9.0  

>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +2

Query: 68   PVRISSALSLSTVHH-GRQVR--SSLRLHRSGPRSDGATRRSRLLQGHRTPH 214
            P+R++  LS ST+H+ G +    S ++L  S P++DG+  + R    H  PH
Sbjct: 1184 PLRMNPPLSGSTMHYQGPESSYISGVQLTNSIPQADGSNFQHRPYPSHPHPH 1235


>At2g43040.1 68415.m05341 calmodulin-binding protein similar to
           pollen-specific calmodulin-binding protein MPCBP
           GI:10086260 from [Zea mays]; contains Pfam profile
           PF00515: TPR Domain
          Length = 704

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +3

Query: 255 AHQVKGRTGLQQG-LEGRLRV-----RAATAQRLRQESPXERSETRTARPR 389
           A  + GR   Q+G LEG LRV       A  QRL+   P E+  T+  RPR
Sbjct: 60  ARALLGRLEYQRGNLEGALRVFEGIDLQAAIQRLQVSVPLEKPATKKNRPR 110


>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
           (IRX1) nearly identical to gi:12836997
          Length = 985

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 303 VLPSLAEVLCVL*LGERVKLLF*SLMELPWCGV 205
           ++P+L+ +  +L LG  + ++  S++EL W GV
Sbjct: 787 IIPTLSNLASMLFLGLFISIILTSVLELRWSGV 819


>At2g01220.2 68415.m00035 expressed protein 
          Length = 388

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 482 EGGGVLLDVQGGPCGAPRPCARCSASTVPKPP 387
           EG   LL+V    CG   PC   SA    KPP
Sbjct: 227 EGHLKLLEVAMSVCGGGYPCFEISAINADKPP 258


>At2g01220.1 68415.m00034 expressed protein 
          Length = 387

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 482 EGGGVLLDVQGGPCGAPRPCARCSASTVPKPP 387
           EG   LL+V    CG   PC   SA    KPP
Sbjct: 226 EGHLKLLEVAMSVCGGGYPCFEISAINADKPP 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,188,721
Number of Sequences: 28952
Number of extensions: 190628
Number of successful extensions: 632
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)