Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_I11
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0576 + 30097139-30097235,30097532-30097630,30097855-300979...    30   2.2  

>02_05_0576 +
           30097139-30097235,30097532-30097630,30097855-30097929,
           30098242-30098328,30098553-30098627,30098940-30099026,
           30099204-30099220
          Length = 178

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +3

Query: 267 LQNSQNVKLPXKM*ASGLKSEGKKLPNT 350
           LQN +N+K   KM  SGL SE + L NT
Sbjct: 104 LQNLENIKRRTKMAQSGLVSESESLKNT 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,936
Number of Sequences: 37544
Number of extensions: 354511
Number of successful extensions: 708
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)